Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYP71.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48270 478 / 9e-166 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48280 476 / 9e-165 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48290 467 / 3e-161 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48310 466 / 6e-161 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT4G13310 458 / 1e-157 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT5G24950 457 / 3e-157 CYP71A15 "cytochrome P450, family 71, subfamily A, polypeptide 15", cytochrome P450, family 71, subfamily A, polypeptide 15 (.1) AT3G48320 456 / 5e-157 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT3G48300 452 / 1e-155 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT4G13290 449 / 4e-154 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT2G30770 437 / 2e-149 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089900 [exp] 496 / 3e-172 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.015G086000 [exp] 494 / 7e-172 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G090000 [exp] 494 / 2e-171 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.016G137600 [exp] 474 / 7e-164 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.015G085600 [exp] 442 / 4e-151 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.002G025800 [exp] 433 / 1e-147 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 432 / 2e-147 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 425 / 2e-144 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025300 [exp] 419 / 4e-142 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017961 [exp] 652 / 0 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 636 / 0 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 628 / 0 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 608 / 0 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029787 [exp] 431 / 8e-147 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10019459 [exp] 424 / 7e-144 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10033172 [exp] 416 / 7e-141 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10040120 [exp] 413 / 2e-139 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10034505 [exp] 410 / 2e-138 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10030924 [exp] 409 / 5e-138 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.015G085800.1 pacid=42774913 polypeptide=Potri.015G085800.1.p locus=Potri.015G085800 ID=Potri.015G085800.1.v4.1 annot-version=v4.1 ATGATCTCATCTGTCTATCCAGAATACAGTTCTAAATTTGTGAAAATGTTAGAGGTTCATGCAATGATATTGCATCCATACTCTCTTGCCTGCCTTCTTT TTATTTTTGTTACCAAATGGTTCTTCTTCAATTCTGCACGGAATAAAAACTTACCACCTTCACCATTAAAGATTCCTGTTGTGGGCAATCTCCTTCAGTT AGGCTTGTATCCCCATCGCTCTCTGCAATCTTTGGCTAAACGCCATGGTCCACTCATGCTCTTGCACCTTGGCAACGCTCCTACACTTGTGGTCTCGTCT GCTGATGGAGCTCATGAGATCTTGAGAACTCATGACGTCATATTTTCAAATAGGCCTGATTCAAGCATTGCAAGAAGACTTTTGTATGACTACAAGGACC TGTCCTTGGCCCTTTATGGCGAGTATTGGAGGCAAATAAGAAGCATATGTGTCGCGCAGCTACTTAGCTCTAAAAGGGTTAAGTTATTCCACTCCATAAG AGAAGAGGAAACAGCTTTGCTAGTCCAAAACGTCGAGCTGTTTTCTTCAAGATCATTACAAGTTGATCTAAGTGAACTGTTTTCTGAATTAACAAATGAT GTGGTGTGTAGGGTTAGTTTTGGCAAGAAGTACAGAGAGGGGGGTAGTGGGAGAAAATTTAAGAAACTATTGGAAGAGTTTGGTGCGGTATTAGGCGTTT TCAATGTTCGAGATTTCATTCCCTGGCTTGGTTGGATAAATTATCTGACAGGTTTAAATGTTAGAGTGGAATGGGTTTTTAAAGAATTTGATCGCTTTCT TGATGAAGTTATTGAAGAATTTAAGGCAAATAGGGTAGGTGTGAATGAGGATAAAATGAACTTTGTGGATGTTCTGCTTGAAATCCAAAAAAATAGCACA GATGGTGCTTCGATAGGCAGCGATAGCATAAAAGCCATCATTTTGGATATGTTTGCAGCAGGAACTGATACAACACATACCGCCTTGGAATGGACAATGA CGGAGTTGCTAAAACACCCCGAAGTTATGAAGAAAGCACAGGATGAGATTAGAAGGATCACCGGAAGCAAAATTAGTGTAACCCAGGATGATGTAGAGAA AACGCTATACTTGAAAGCAGTTATCAAGGAATCTCTTCGTTTACACCCACCAATTCCCACGCTTATTCCGCGAGAGTCAACCAAGGATGTCAAGGTACAG GGCTATGATATTCTAGCCAAAACCAGAGTAATCATCAATGCTTGGGCAATTGGGAGAGATCCTTCATCGTGGGAAAATCCAGATGAATTTAGACCAGAAA GGTTCTTAGAGAGTGCTATAGATTTCAAGGGAAATGACTTCCAATTCATTCCTTTTGGAGCTGGAAGAAGAGGTTGCCCAGGAACAACATTTGCTTCTTC TGTGATTGAGATTACGTTGGCTAGTCTTTTGCACAAGTTCAATTGGGCATTGCCTGGTGGAGCAAAACCTGAAGACTTGGATATAACAGAAGCTCCAGGG CTAGCCATCCATAGGAAATTCCCACTTGTTGTTATTGCAACTCCTCACTCTTTCTAG
AA sequence Show only first row Show all	>Potri.015G085800.1 pacid=42774913 polypeptide=Potri.015G085800.1.p locus=Potri.015G085800 ID=Potri.015G085800.1.v4.1 annot-version=v4.1 MISSVYPEYSSKFVKMLEVHAMILHPYSLACLLFIFVTKWFFFNSARNKNLPPSPLKIPVVGNLLQLGLYPHRSLQSLAKRHGPLMLLHLGNAPTLVVSS ADGAHEILRTHDVIFSNRPDSSIARRLLYDYKDLSLALYGEYWRQIRSICVAQLLSSKRVKLFHSIREEETALLVQNVELFSSRSLQVDLSELFSELTND VVCRVSFGKKYREGGSGRKFKKLLEEFGAVLGVFNVRDFIPWLGWINYLTGLNVRVEWVFKEFDRFLDEVIEEFKANRVGVNEDKMNFVDVLLEIQKNST DGASIGSDSIKAIILDMFAAGTDTTHTALEWTMTELLKHPEVMKKAQDEIRRITGSKISVTQDDVEKTLYLKAVIKESLRLHPPIPTLIPRESTKDVKVQ GYDILAKTRVIINAWAIGRDPSSWENPDEFRPERFLESAIDFKGNDFQFIPFGAGRRGCPGTTFASSVIEITLASLLHKFNWALPGGAKPEDLDITEAPG LAIHRKFPLVVIATPHSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085800 [exp]	0	1	Pt-CYP71.2
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.010G208600 [exp]	1.00	0.9393
AT4G27590			Heavy metal transport/detoxifi...		Potri.015G003800 [exp]	1.41	0.9387
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.006G023700 [exp]	6.48	0.8867
AT1G25275			unknown protein		Potri.015G116800 [exp]	7.41	0.8931
AT1G65920			Regulator of chromosome conden...		Potri.004G080900 [exp]	7.74	0.8761
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	8.94	0.8687	Pt-PSPK3.1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.010G111400 [exp]	10.58	0.9025
AT1G62420			Protein of unknown function (D...		Potri.004G001400 [exp]	11.61	0.8696
AT1G60010			unknown protein		Potri.010G095400 [exp]	12.40	0.8582
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.011G114500 [exp]	14.14	0.8836

Compare expression of checked genes

Potri.015G085800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.