Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13080 434 / 2e-148 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26330 431 / 5e-147 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G48280 430 / 5e-147 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26310 422 / 1e-143 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 420 / 6e-143 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT1G13110 419 / 2e-142 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G48310 417 / 4e-142 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48270 417 / 8e-142 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48320 416 / 2e-141 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT5G25140 414 / 8e-141 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090000 [exp] 961 / 0 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.012G089900 [exp] 955 / 0 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.015G085800 [exp] 494 / 7e-172 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.008G223500 [exp] 464 / 7e-160 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.002G025425 [exp] 459 / 3e-158 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 458 / 1e-157 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 457 / 3e-157 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025300 [exp] 456 / 5e-157 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 455 / 2e-156 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017961 [exp] 492 / 1e-170 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 474 / 5e-164 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 466 / 8e-161 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10016601 [exp] 465 / 4e-160 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10019457 [exp] 460 / 2e-158 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10006443 [exp] 454 / 1e-155 AT3G26310 366 / 2e-121 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) Lus10030924 [exp] 449 / 5e-154 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10042815 [exp] 443 / 1e-151 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10040120 [exp] 442 / 4e-151 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10039063 [exp] 440 / 8e-150 AT3G26300 392 / 3e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.015G086000.1 pacid=42774770 polypeptide=Potri.015G086000.1.p locus=Potri.015G086000 ID=Potri.015G086000.1.v4.1 annot-version=v4.1 ATGGCTTTTCTACAATGGCTGAAAGAAAGCTCCAGTCCTACCTTGCTCTTTGTAACTATTTTTCTTTTAGTAGCGCTCAAGTTTCTCGTGAAGGGGAAAC TGAAAAACAGTAAGCTCAATCTCCCACCAAGCCCTGCGAAGTTGCCAATCATTGGCAACCTTCACCAGCTTGGTAACATGCCTCACATATCTCTCCGATG GCTTGCCAAGAAGTATGGTCCAATCATATTTTTACAACTTGGGGAGATCCCAACTGTAGTGATTTCATCAGTGCGATTGGCAAAAGAAGTTCTGAAAACC CATGATCTTGTACTCTCTAGCCGTCCTCAGCTCTTCTCGGCCAAACACTTGTTCTATGGTTGCACTGATATTGCTTTTGCTCCATATGGTGCTTACTGGA GGAATATAAGGAAAATTTGCATACTTGAGCTTCTTAGTGCCAAGCGTGTCCAATGGTACAGCTTTGTTAGAGAAGAAGAAGTTGCTCGCTTGATTCATCG GATTGCAGAATCTTATCCTGGCACTACCAACCTTAGCAAGATGATTGGACTATATGCCAATGATGTCCTTTGTCGGGTTGCGTTAGGAAGGGATTTCTCT GGAGGAGGAGAGTATGATCGGCACGGGTTCCAGAAGATGCTTGATGATTATCAAGCATTGCTTGGAGGATTCAGTCTTGGAGACTATTTTCCTTCAATGG AGTTTGTGCACAGTCTAACTGGAATGAAATCGAAACTCCAGCACACCGTCAGACGGTTTGATCAGTTCTTCGATAAGGTAATAACCGAGCACCAAAATTC TGAGGGGAAACAAGAGGAGAAGAAGGACCTTGTTGACGTTCTACTCGATATTCAAAAGGATGGATCTTCTGAAATGCCTCTCACCATGGATAATATTAAA GCTGTCATCTTGGACATGTTTGCTGCAGGAACTGATACAACCTTCATAACCCTTGATTGGACAATGACAGAGCTTATCATGAATCCTCAAGTCATGGAGA AAGCACAAGCTGAAGTGCGAAGTGTTGTCGGAGACAGAATAGTTGTACAAGAGAGTGATCTGCCCCGACTGCACTACATGAAAGCTGTTATCAAAGAGAT CTTTCGATTACATCCTGCGGTTCCAGTTTTAGTCCCAAGAGAATCTTTAGAAGATGTTATCATTGATGGGTACAACATTCCAGCTAAAACACGGATTTAT GTCAATGTCTGGGGAATGGGGAGGGATCCAGAACTGTGGGAAAATCCTGAAACATTTGAACCAGAAAGATTTATGGGCAGCAGTATAGACTTCAAGGGGC AAGATTTTGAGCTAATACCATTTGGAGCTGGTAGAAGAAGCTGCCCAGCAATCACATTTGGAATAGCAACTGTTGAAATTGCTTTAGCTCAACTCCTCCA CAGCTTTGATTGGGAGCTTCCCCCTGGTATCAAAGCTCAGGATATAGATAATACAGAAGCTTTCGGCATCTCAATGCACAGGACAGTTCCGCTACATGTC ATTGCCAAACCACACTTCAACTAA
AA sequence Show only first row Show all	>Potri.015G086000.1 pacid=42774770 polypeptide=Potri.015G086000.1.p locus=Potri.015G086000 ID=Potri.015G086000.1.v4.1 annot-version=v4.1 MAFLQWLKESSSPTLLFVTIFLLVALKFLVKGKLKNSKLNLPPSPAKLPIIGNLHQLGNMPHISLRWLAKKYGPIIFLQLGEIPTVVISSVRLAKEVLKT HDLVLSSRPQLFSAKHLFYGCTDIAFAPYGAYWRNIRKICILELLSAKRVQWYSFVREEEVARLIHRIAESYPGTTNLSKMIGLYANDVLCRVALGRDFS GGGEYDRHGFQKMLDDYQALLGGFSLGDYFPSMEFVHSLTGMKSKLQHTVRRFDQFFDKVITEHQNSEGKQEEKKDLVDVLLDIQKDGSSEMPLTMDNIK AVILDMFAAGTDTTFITLDWTMTELIMNPQVMEKAQAEVRSVVGDRIVVQESDLPRLHYMKAVIKEIFRLHPAVPVLVPRESLEDVIIDGYNIPAKTRIY VNVWGMGRDPELWENPETFEPERFMGSSIDFKGQDFELIPFGAGRRSCPAITFGIATVEIALAQLLHSFDWELPPGIKAQDIDNTEAFGISMHRTVPLHV IAKPHFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G086000 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	1.41	0.9385
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	1.41	0.9318
					Potri.018G014550 [exp]	2.44	0.8597
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219700 [exp]	3.00	0.9306
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	12.32	0.8588
AT3G03720		CAT4	cationic amino acid transporte...		Potri.019G039600 [exp]	12.68	0.8177
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.011G051600 [exp]	14.28	0.7759
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	15.19	0.8482
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	15.49	0.8546
					Potri.007G089400 [exp]	15.58	0.8556

Compare expression of checked genes

Potri.015G086000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.