Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14420 313 / 1e-105 RGLG2 RING domain ligase2 (.1.2.3.4) AT3G01650 304 / 1e-101 RGLG1 RING domain ligase1 (.1) AT1G67800 296 / 2e-99 Copine (Calcium-dependent phospholipid-binding protein) family AT5G63970 243 / 2e-79 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT1G79380 220 / 6e-70 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G19080 49 / 2e-06 RING/U-box superfamily protein (.1) AT1G08860 46 / 2e-05 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G59560 45 / 2e-05 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT2G40770 44 / 7e-05 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) AT5G07300 44 / 0.0001 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090100 [exp] 400 / 6e-140 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G183600 [exp] 325 / 3e-110 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 320 / 4e-108 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.001G342200 [exp] 319 / 4e-108 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 274 / 4e-91 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 271 / 1e-89 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G174800 [exp] 246 / 1e-79 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.005G065700 [exp] 238 / 1e-76 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.008G081300 [exp] 231 / 3e-74 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011405 [exp] 309 / 4e-104 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10006463 [exp] 304 / 2e-102 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10022294 [exp] 303 / 1e-101 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10000144 [exp] 291 / 4e-99 AT5G14420 384 / 2e-132 RING domain ligase2 (.1.2.3.4) Lus10036879 [exp] 292 / 6e-97 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10033043 [exp] 272 / 2e-89 AT3G01650 492 / 4e-172 RING domain ligase1 (.1) Lus10006231 [exp] 250 / 9e-82 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10014587 [exp] 238 / 1e-76 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 236 / 2e-75 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10020885 [exp] 208 / 7e-65 AT5G63970 503 / 6e-179 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF07002 [poplar] [flax] Copine Copine CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.015G086200.3 pacid=42775460 polypeptide=Potri.015G086200.3.p locus=Potri.015G086200 ID=Potri.015G086200.3.v4.1 annot-version=v4.1 ATGGCTATTACAATAGTTGAGCAAAGTGGCGGCCAGTACCATGTTTTACTTATAATAGCTGAGGGGCAGGTGACAAGAAGTGTTGACACTGAGCGTGGCC AACTAAGCCCGCAGGAAAAGGGAACTGTTGAAGCAATTGTGAAAGCTAGTGAGTACCCCCTGTCCATTATATTAGTTGGGGTTGGAGATGGACCATGGGA CATGATGAAGGAATTTGATGATAACATCCCTGCCCGGGCATTTGACAATTTCCAGTTTGTGAATTTTACAAAAATAATGTCAAAGAACATGGACCGATCC AGAAAAGAAGCAGAGTTTTCTCTTTCTGCTTTGATGGAAATACCTTCTCAGTATAAAGCAACACTAGAGCTTAATATTTTGGGTGCTACTAGAGGGAAGG GCATCGATAGGGTTCCTCTTCCCCCTCCCCAGTATGGTGCTGGTGCAGATTCATTCAGGAAGGGCATCGATAGGGTTCCTCTTCCCTCTCCCCGGTATGG TGCTGGTGCAGATTCATTCAGAAACCCAGAACCTGCTCAATCAAGCAGCACCCGTCCAAGTGCGCCTTCTTCTGAAAGACATGATGGCACAGCATTTCCT GGAAGTTCTGCTTCTGATAATCATCTTTGTCCCATTTGCCTCACCGACCCTAAGGATATGGCCTTTAGTTGTGGACATCAGACATGCTGTGACTGTGGTC AAGATCTCCAGTTATGCCCCATCTGTCGAAGCACCATCCACACCAGAATAAAGCTCTATTAA
AA sequence Show only first row Show all	>Potri.015G086200.3 pacid=42775460 polypeptide=Potri.015G086200.3.p locus=Potri.015G086200 ID=Potri.015G086200.3.v4.1 annot-version=v4.1 MAITIVEQSGGQYHVLLIIAEGQVTRSVDTERGQLSPQEKGTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTKIMSKNMDRS RKEAEFSLSALMEIPSQYKATLELNILGATRGKGIDRVPLPPPQYGAGADSFRKGIDRVPLPSPRYGAGADSFRNPEPAQSSSTRPSAPSSERHDGTAFP GSSASDNHLCPICLTDPKDMAFSCGHQTCCDCGQDLQLCPICRSTIHTRIKLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.015G086200 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150100 [exp]	2.23	0.7761
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G005600 [exp]	11.40	0.7851
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013400 [exp]	11.91	0.7964
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.018G120827 [exp]	13.96	0.7847
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	23.49	0.7368
AT5G13090			unknown protein		Potri.003G168500 [exp]	27.71	0.7361
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012500 [exp]	30.28	0.7661
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G070900 [exp]	33.58	0.7553
AT3G20600		NDR1	non race-specific disease resi...		Potri.011G133900 [exp]	34.07	0.7573	Pt-NDR1.2
AT5G23370			GRAM domain-containing protein...		Potri.004G068100 [exp]	43.81	0.7098

Compare expression of checked genes

Potri.015G086200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.