Plant FIBer expression Database

Potri.015G086600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48330 374 / 8e-131 ATPIMT1, PIMT1 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2)
AT5G50240 358 / 1e-123 PIMT2, AtPIMT2 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G090300
[exp]
516 / 0 AT3G48330 380 / 5e-134 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017776
[exp]
395 / 3e-138 AT5G50240 372 / 4e-130 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3)
Lus10033049
[exp]
391 / 8e-138 AT5G50240 365 / 1e-128 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Representative CDS sequence
>Potri.015G086600.2 pacid=42775179 polypeptide=Potri.015G086600.2.p locus=Potri.015G086600 ID=Potri.015G086600.2.v4.1 annot-version=v4.1
ATGCCTGGGCTGCTTTTGCTCATGCCTATTTCTCTATCCCTGCCAGCGGGAGTCATAGCGTATGGTTACCGCAACTACTCGCCTCCTCTTAAGCGTCTCT
TAGCCCACAACAACAACGACACCGCTCTCCTTCGCTATCTTTATCTTCGCAGCAGCTGCAACAATATTCCATCTCAACTTACCTCTCTTTTCTTTTTTAA
ATTTTTCCCAACAAACCTTAATTGTCTCCTCGCGGGTAACTCTCTTTTCTTCAGGATGGAGGGAAATCTGTTTCAAGTTGGGTGGACATGCTATGTTCTT
CTCGCCTTCATTAGTGGGACCAATTACTTCCATAGTAGTGCTACACAATTTTTCCCAAGCCCAGGGGCTCTGGACCTACAAAGTCAGCCCATAGCCATTT
CTAATGTGGAGCGATTCTGTTCTGGAAGTAGCATCAATAAAAATAAAGCAATGGTGGAGCATTTGCAGCATTATGGGGTCATCAGTTCTAAAAAGGTTTC
TGAAGTAATGGAAACTATCGACAGGGCTTTGTTTGTGCCAGATGGTACTCCAGCTTATGTTGACAGTCCCATGGCGATAGGTTACAATGCCACCATTTCT
GCACCTCATATGCATGCAACTTGCCTGCAGTTGTTGGAGGAGAATTTGAAGCCTGGAATGCATGCACTAGATGTTGGCTCAGGGACTGGGTATTTGACAG
CATGCCTTGCTTTGATGGTTGGACCACAAGGTCGTGCTGTTGGTGTGGAACATATTCCAGAGCTGGCTAATTCTTCCTTAAAGAATATTGAGAAAAGCGC
AGCTGCCCCATTGTTGAAAGAAGGTTCCCTCTCAATTCATGTTGGTGATGGAAGACAAGGCTGGCCAGAGTTTGCTCCATATGATGCCATACATGTTGGG
GCAGCAGCACCAGAAATCCCACAGCCACTTCTCGATCAGTTGAAGCCTGGTGGCAGGATGGTGATTCCAGTTGGTAACATATTTCAGGATTTGAAGGTGG
TTGACAAGAAGGAGGATGGTTCCATCAGTGTTCGGAGTGAAACTTCTGTTCGATATGTCCCTTTAACAAGTCGAGATGCCCAATTGCGGGGTTATTAG
AA sequence
>Potri.015G086600.2 pacid=42775179 polypeptide=Potri.015G086600.2.p locus=Potri.015G086600 ID=Potri.015G086600.2.v4.1 annot-version=v4.1
MPGLLLLMPISLSLPAGVIAYGYRNYSPPLKRLLAHNNNDTALLRYLYLRSSCNNIPSQLTSLFFFKFFPTNLNCLLAGNSLFFRMEGNLFQVGWTCYVL
LAFISGTNYFHSSATQFFPSPGALDLQSQPIAISNVERFCSGSSINKNKAMVEHLQHYGVISSKKVSEVMETIDRALFVPDGTPAYVDSPMAIGYNATIS
APHMHATCLQLLEENLKPGMHALDVGSGTGYLTACLALMVGPQGRAVGVEHIPELANSSLKNIEKSAAAPLLKEGSLSIHVGDGRQGWPEFAPYDAIHVG
AAAPEIPQPLLDQLKPGGRMVIPVGNIFQDLKVVDKKEDGSISVRSETSVRYVPLTSRDAQLRGY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G48330 ATPIMT1, PIMT1 Arabidopsis thaliana protein-l... Potri.015G086600
[exp]
0 1
AT4G36720 HVA22K HVA22-like protein K (.1) Potri.009G113400
[exp]
2.44 0.7625
AT4G01100 ADNT1 adenine nucleotide transporter... Potri.001G094100
[exp]
4.24 0.7771
AT3G27310 PUX1 plant UBX domain-containing pr... Potri.001G264500
[exp]
4.24 0.6900
AT2G05630 ATG8D Ubiquitin-like superfamily pro... Potri.014G153800
[exp]
12.68 0.6997
AT1G18490 Protein of unknown function (D... Potri.012G057400
[exp]
12.84 0.6441
AT3G11530 Vacuolar protein sorting 55 (V... Potri.006G209100
[exp]
19.33 0.6724
AT1G27330 Ribosome associated membrane p... Potri.003G171250
[exp]
21.00 0.5728
AT2G48150 ATGPX4 glutathione peroxidase 4 (.1) Potri.014G138800
[exp]
21.90 0.6744 GPX4.1,PtrcGpx4
AT5G54540 Uncharacterised conserved prot... Potri.011G130000
[exp]
24.37 0.6525
AT1G18470 Transmembrane Fragile-X-F-asso... Potri.012G060100
[exp]
28.33 0.6854

Potri.015G086600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.