Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31880 804 / 0 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) AT1G31420 249 / 3e-74 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT4G28650 248 / 3e-71 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G62710 234 / 1e-68 Leucine-rich repeat protein kinase family protein (.1) AT5G49660 240 / 2e-68 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G39400 229 / 4e-64 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G72180 222 / 5e-62 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 222 / 8e-62 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G17750 221 / 2e-61 AtPEPR2 PEP1 receptor 2 (.1) AT5G62230 219 / 3e-61 ERL1 ERECTA-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090500 [exp] 1050 / 0 AT2G31880 784 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 258 / 2e-77 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G105000 [exp] 248 / 1e-73 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.002G111700 [exp] 250 / 9e-72 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G256500 [exp] 249 / 1e-71 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G161000 [exp] 239 / 7e-68 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 238 / 7e-67 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G126100 [exp] 232 / 2e-65 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G063300 [exp] 231 / 5e-65 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013675 [exp] 822 / 0 AT2G31880 781 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10033041 [exp] 820 / 0 AT2G31880 783 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10017963 [exp] 778 / 0 AT2G31880 745 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10041953 [exp] 775 / 0 AT2G31880 741 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 241 / 2e-68 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10011576 [exp] 238 / 6e-68 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036672 [exp] 229 / 9e-67 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 235 / 2e-66 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10038382 [exp] 226 / 9e-66 AT4G20270 734 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10033104 [exp] 226 / 1e-65 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G086800.1 pacid=42776176 polypeptide=Potri.015G086800.1.p locus=Potri.015G086800 ID=Potri.015G086800.1.v4.1 annot-version=v4.1 ATGGCCGTTCCTCACCAGAAACACCACCTCTTCTTCATTCTCTTTCTCCTATCTCTCCTCCTTCCCACTTATGCAAGATTAAACCTTGACCATTCAGACC TCAAAGCCTTCTCAATCATCCAGAAAGACTTGGGTATCAACGGTCAACGCAGCTCCTCCTCTACACCATGCAACACCCCTGGGGTGTTTTGTGAGAGGAG GCTCTCTCCCAACGGCACCTATGTGCTCAAAATCACAAGACTCGTCTTTAAGTCTCAACGGCTCACCGGGTTCTTGTCCCCGGCAATTGGACGGCTGTCC GAGCTCAAAGAGCTCTCATTAACCAACAACCAACTGGTTGACCACCTCCCTGTTCAAATAGTCAACTGCAAGAAACTAGATATTCTTGAGCTTGGAAACA ACAAGTTTTCAGGTGAAGTTCCCTCTGAATTATCATCAATTGTTAGTCTTCGAGTTCTTGATCTCTCTAGGAATTTATTTTCTGGGAATTTGAGTTTCTT AAAGCATTTCCCCAACCTGGAAAATCTCTCTCTTGCAAATAATCTCTTCACTGGAAAAGTTCCAAAGTCTATCCGTTCGTTTCGCAATCTCCAGTCCTTC GACTTCTCAGGGAACAGTTTTCTTGAAGGACCTGTGCCAGTGATAAGAAAAGGTGAATCCTCAAGGCCCCAATACCCAAAACGTTATATTTTGGCGGAGA ACACGTCAAGTACAAAATCAAGGAATACTTCTTCTGGAAACAAAACTTACAACCTAGCTCCAGCTCCTGGACCATCAGCAGCAGCGCCACACAAGCACAA GAACGGCAAAAGGAAGCTTGCCGGTTGGCTCTTTGGATTTCTTGCCGGGTCAGTAGCTGGGTGTTTATCTGGGCTTGTGTTTTCATTATTGTTTAAGATA GTATTGGCAGCAGTAAAAGGCGGAGGGAGAGATGGAGGGCCTGCAATATTTAGTCCATTGATCAAGAGAGCAGAGGATTTAGCTTTCTTGGAAAAAGATG ATGGGCTTGCAAACTTGGAAGTCATTGGGAAAGGTGGATGTGGAGAAGTTTACAAAGCTGAGCTGCCAGGAAGTAATGGCAAAATGATTGCCATAAAAAA GATTATTCAGCCTCCAAAAGATGCTGCCGAGTTGACTGAAGAAGATAGTAAGCTTCTACACAAGAAAATGAGACAAATCCAGTCAGAGATCAATACCGTC GGCCACATTCGGCATCGAAACCTTCTTCCTCTTCTAGCTCATGTGTCTCGTCCTGATTGTCATTATCTTGTCTATGAATTAATGAAAAACGGAAGTCTAC AAGATGCGTTGAACCACGTTACTGAAGGGAGAAGAGAATTGGACTGGTTAGCTCGCCACAGAATTGCAGTAGGAGTAGCATCGGGACTTGAGTACCTTCA CTTGAGCCATAGTCCACGGATCATTCATAGAGATCTCAAGCCTGCAAATGTACTTCTCGACGACAGCATGGAAGCTAGAATTGCCGATTTTGGACTTGCA AAAGCAATGCCAGATGCCCAAACACATATCACAACTTCTAATGTTGCAGGAACAGTGGGGTACATAGCACCAGAGTACCACCAAACGCTCAAATTTACAG ACAAGTGTGACATATACAGTTTTGGAGTGGTGCTTGGGGTATTGGTGATGGGAAAGCTTCCATCTGATGAGTTTTTTCAAAACACACGTGAAATGAGTTT GGTTAAGTGGATGAGAAATATAATGACTTCGGAGAATCCAAGACAAGCTATTGATCCAAAGCTGATGGGCAATGGGCTAGAGGAGCAAATGCTGCTGGTT CTGAAAATTGCTTGCTTCTGCACTATTGATGACCCAAAACAGAGGCCAAATAGTAAGGATGTTAGGTGCATGTTGTCACAAATCAAACACTAG
AA sequence Show only first row Show all	>Potri.015G086800.1 pacid=42776176 polypeptide=Potri.015G086800.1.p locus=Potri.015G086800 ID=Potri.015G086800.1.v4.1 annot-version=v4.1 MAVPHQKHHLFFILFLLSLLLPTYARLNLDHSDLKAFSIIQKDLGINGQRSSSSTPCNTPGVFCERRLSPNGTYVLKITRLVFKSQRLTGFLSPAIGRLS ELKELSLTNNQLVDHLPVQIVNCKKLDILELGNNKFSGEVPSELSSIVSLRVLDLSRNLFSGNLSFLKHFPNLENLSLANNLFTGKVPKSIRSFRNLQSF DFSGNSFLEGPVPVIRKGESSRPQYPKRYILAENTSSTKSRNTSSGNKTYNLAPAPGPSAAAPHKHKNGKRKLAGWLFGFLAGSVAGCLSGLVFSLLFKI VLAAVKGGGRDGGPAIFSPLIKRAEDLAFLEKDDGLANLEVIGKGGCGEVYKAELPGSNGKMIAIKKIIQPPKDAAELTEEDSKLLHKKMRQIQSEINTV GHIRHRNLLPLLAHVSRPDCHYLVYELMKNGSLQDALNHVTEGRRELDWLARHRIAVGVASGLEYLHLSHSPRIIHRDLKPANVLLDDSMEARIADFGLA KAMPDAQTHITTSNVAGTVGYIAPEYHQTLKFTDKCDIYSFGVVLGVLVMGKLPSDEFFQNTREMSLVKWMRNIMTSENPRQAIDPKLMGNGLEEQMLLV LKIACFCTIDDPKQRPNSKDVRCMLSQIKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.015G086800 [exp]	0	1
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	3.00	0.9099
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	5.47	0.8879
AT1G66920			Protein kinase superfamily pro...		Potri.015G018200 [exp]	5.65	0.8907
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.012G019900 [exp]	6.32	0.8824
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	6.48	0.8913	RIN4.1
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121000 [exp]	7.74	0.8663
AT2G03430			Ankyrin repeat family protein ...		Potri.002G213200 [exp]	9.16	0.8837
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	9.59	0.8952
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091300 [exp]	13.41	0.8801
AT5G41350			RING/U-box superfamily protein...		Potri.003G129900 [exp]	14.45	0.8777

Compare expression of checked genes

Potri.015G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.