Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24760 560 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 514 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 500 / 9e-179 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 432 / 2e-151 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 392 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 366 / 4e-127 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 352 / 2e-120 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G31020 349 / 5e-120 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 330 / 8e-113 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 303 / 4e-100 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090800 [exp] 681 / 0 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 579 / 0 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 446 / 3e-157 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 444 / 3e-156 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 443 / 8e-156 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 427 / 2e-149 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G097300 [exp] 407 / 3e-142 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.017G117633 [exp] 403 / 2e-140 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 350 / 9e-121 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018081 [exp] 573 / 0 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042075 [exp] 571 / 0 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10022307 [exp] 538 / 0 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000544 [exp] 498 / 1e-177 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10035148 [exp] 440 / 1e-154 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 434 / 3e-152 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033575 [exp] 388 / 1e-134 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10017617 [exp] 385 / 3e-133 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10028497 [exp] 366 / 3e-126 AT5G38220 466 / 2e-166 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10036842 [exp] 368 / 6e-126 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.015G087100.1 pacid=42775894 polypeptide=Potri.015G087100.1.p locus=Potri.015G087100 ID=Potri.015G087100.1.v4.1 annot-version=v4.1 ATGGGAGGGGTGACTTCATCAATGGCAGCAAAATTAGCATTTTTCCCACCAAACCCACCATCATACAAGCTAATTACAGATGATGCCACTGGTCTCTTAC TTCTTGAACACTTTTCTCACCGTGAAAATGTTGATGTTTTGCGTCTCCCAACTCGGCGAGGGACTGAGATTGTTGCTGTTTACGTTAGATATCCAATGGC AACTTCTACTTTGCTTTACTCTCATGGAAATGCAGCTGATATTGGTCAGATGTATGAGCTCTTCATCGAATTGAGTATTCACTTGCGTGTTAATCTCATG GGGTATGACTACTCTGGCTATGGACAATCATCAGGAAAGCCCAGTGAACACAATACATATGCAGATATTGAAGCTGCTTATAAGTGTCTCGAGGAGAGCT ATGGTGCCAAGCAGGAAAATATCATCCTTTATGGCCAATCTGTGGGAAGTGGCCCAACCGTGGATCTTGCTGCACGTTTACCTCGACTAAGAGCTGTTGT ACTGCATAGTCCTATACTATCAGGGTTAAGAGTGATGTATCCTGTGAAACGCTCATACTGGTTTGACATCTACAAGAACATAGACAAAATTCCTCTGGTG AAGTGTCCCACGCTGGTAATCCATGGAACTGCTGATGAAGTAGTTGACTGTTCTCATGGCAAGCAACTTTGGGAGCTGTGCCAAGAGAAATATGAACCTC TGTGGCTCAAAGGGGGTAATCACTGTAATTTGGAGATGTATCCGGAGTATCTGAGGCATCTGAGGAAGTTTATATCAACAGTTGAGAAATCAGCATACCG AAGAAATGCCGGGAGGAGAAGTGTAGATGGGTTTGAACAGGCCAGACGAAGTAGTGATTGTTTAGAGGGTCCAAGGAAGAGCACAGATAGGAGGGAGAAA CCAAGAAAGAGCACAGATAGGCCAGAAAGACTGAGATTTCACGAATTCAAGTTCACGCACACGGACAAGGCAGAAAAGTTAAAGGTCTCGTTTGAGCACA AGGAGAGGTCACGGAGAAGCGTGGAATACTGCGATAAATCGAGAAAAAGCATGGATTTACAGCTAGAAAAAGCACGGAAGAGTGTGGACTGGGTGGATAG AATTCGATAA
AA sequence Show only first row Show all	>Potri.015G087100.1 pacid=42775894 polypeptide=Potri.015G087100.1.p locus=Potri.015G087100 ID=Potri.015G087100.1.v4.1 annot-version=v4.1 MGGVTSSMAAKLAFFPPNPPSYKLITDDATGLLLLEHFSHRENVDVLRLPTRRGTEIVAVYVRYPMATSTLLYSHGNAADIGQMYELFIELSIHLRVNLM GYDYSGYGQSSGKPSEHNTYADIEAAYKCLEESYGAKQENIILYGQSVGSGPTVDLAARLPRLRAVVLHSPILSGLRVMYPVKRSYWFDIYKNIDKIPLV KCPTLVIHGTADEVVDCSHGKQLWELCQEKYEPLWLKGGNHCNLEMYPEYLRHLRKFISTVEKSAYRRNAGRRSVDGFEQARRSSDCLEGPRKSTDRREK PRKSTDRPERLRFHEFKFTHTDKAEKLKVSFEHKERSRRSVEYCDKSRKSMDLQLEKARKSVDWVDRIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.015G087100 [exp]	0	1
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	8.18	0.8616
AT2G26850			F-box family protein (.1)		Potri.016G035900 [exp]	25.29	0.7899
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.012G069900 [exp]	26.38	0.8198
AT2G37195			unknown protein		Potri.016G090000 [exp]	36.22	0.7997
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G259200 [exp]	40.86	0.7971
AT5G23750			Remorin family protein (.1.2)		Potri.001G107000 [exp]	48.18	0.7996
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059900 [exp]	50.43	0.7643
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012500 [exp]	54.49	0.7907
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	61.64	0.7868
AT1G19430			S-adenosyl-L-methionine-depend...		Potri.002G260600 [exp]	67.83	0.7819

Compare expression of checked genes

Potri.015G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.