Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50230 801 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 118 / 1e-29 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 113 / 5e-28 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 102 / 1e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 94 / 5e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 89 / 2e-19 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G48630 89 / 3e-19 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G18080 88 / 8e-19 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 86 / 2e-17 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 86 / 2e-17 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306500 [exp] 120 / 3e-30 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 114 / 5e-28 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 111 / 5e-27 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 103 / 3e-24 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 98 / 3e-22 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 94 / 2e-20 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.008G172800 [exp] 94 / 3e-20 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G064600 [exp] 90 / 6e-19 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 85 / 8e-18 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042076 [exp] 835 / 0 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018081 [exp] 833 / 0 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10015925 [exp] 411 / 2e-140 AT5G50230 379 / 1e-127 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 112 / 1e-27 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 111 / 5e-27 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 106 / 3e-25 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 105 / 7e-25 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 97 / 1e-21 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017570 [exp] 96 / 2e-21 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017569 [exp] 94 / 6e-21 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.015G087200.3 pacid=42775972 polypeptide=Potri.015G087200.3.p locus=Potri.015G087200 ID=Potri.015G087200.3.v4.1 annot-version=v4.1 ATGTCGCAAGAAGAGATTGGTCTAGAAGCAATAAAGCAGGCGTTGAAAGCTTTGAAGAAGCGGCATTTACTGGAAGAAGGAGCTCATGCTCCTGCCTTTA TTGCTCTTTCCAGGCCCATTATTTCTCAGGGATCAGAGTGGAAAGAGAAAGCAGAAAATCTAGAAGTAGAACTTCAGCAATGTTACAAAGCTCAATCTCT TTTATCTAACCAACTTGTGGTGGAGGTGGCCGAATCGAGAGCAGCGAAGACTTCACTGCAAGAGAAGGAAGCAGCTATCACTGATTTGCAAAATGAGGCT ACTCAAATTAGGGATGAGTGTGGTCAGTTGAGGGAGGATTTTGAGGAAAAGATTAAAGCATTAGAATTGGTTATGAGTGAGAACCAGGCACTTAGAACAC AATTGGAAGAGATGACTCTTAAAGCTAAGAATGCTGAGGCTGAAAATAAGATGTTGATTGATCGATGGATGCTACAAAAGATGCAGGATGCCGAACGCCT TAATGAGGCTAATGCACTTTATGAAGAAATGATTGATCGGCTCAAGGCAAGTGGTTTAGAGAGCCTTGCTAGGCAACAAGTGGATGGAGTTGTCCGGCGA AATGAAGATGGTGCTGAGTACTTTGTTGAATCAACGATCCCTTCTACATGCAAGCACAAGATCACTGCTCATGAGGGTGGCTGTGCTTCTATATTGTTTG AGTACAATTCTGGAAAATTGATTAGTGGGGGACAAGACCGGTCAATCAAGATGTGGGATACAAATACAGGATCATTAAGTCACACTCTTTATGGTTGTCT TGGCTCTGTTCTTGATCTTTCCATTACTCATGACAATAGATCCATCATTGCAGCTAGCAGCTCAAACAACTTGTATGTATGGGATGTTACCACAGGACGA GTACGTCACACTCTCACAGGTCACACTGATAAAGTGTGTGCTGTTGATGTCAGCAAAATTTCAACTCGTCATGTTGTCAGTGCTGCTTATGATCGTACCA TAAAAGTGTGGGATCTGCAAAAAGGTTTCTGCACCAACACGATCATTTTCCACAGCAACTGCAATTCTCTTTGCTTCAGCATGGATGGACAGACTATTTG TTCAGGCCATGTTGATGGGAATCTTCGTTTGTGGGATATTCAGACAGGAAAGCTACTTAGTGAAGTAGCTGCACATTCGCTTGCTGTTACATCAATATCT GTGTCTCGAAATGGAAGTGTTGTACTGACAAGTGGGAGAGACAACTTGCATAACTTATTTGATATGCGATCCTTGGAAGTTTGTGGCACTCTAAGAGCAA CTGGAAACAGGGTGGCTTCTAATTGGAGTCGCTCCTGTATCAGTCCTGATGACAACTATGTTGCTGCTGGTTCAGCTGATGGATCTGTACATATTTGGTC AATATCTCAAGGTGATATAGTAAGCACCCTGAAGGAACACACAGCTCCAGTTCTTTGTTGTTCATGGAGTGGTCTTGGCAAACCACTAGCCTCTTCTGAC AAGAATGGAATTATCTACACCTGGACATGA
AA sequence Show only first row Show all	>Potri.015G087200.3 pacid=42775972 polypeptide=Potri.015G087200.3.p locus=Potri.015G087200 ID=Potri.015G087200.3.v4.1 annot-version=v4.1 MSQEEIGLEAIKQALKALKKRHLLEEGAHAPAFIALSRPIISQGSEWKEKAENLEVELQQCYKAQSLLSNQLVVEVAESRAAKTSLQEKEAAITDLQNEA TQIRDECGQLREDFEEKIKALELVMSENQALRTQLEEMTLKAKNAEAENKMLIDRWMLQKMQDAERLNEANALYEEMIDRLKASGLESLARQQVDGVVRR NEDGAEYFVESTIPSTCKHKITAHEGGCASILFEYNSGKLISGGQDRSIKMWDTNTGSLSHTLYGCLGSVLDLSITHDNRSIIAASSSNNLYVWDVTTGR VRHTLTGHTDKVCAVDVSKISTRHVVSAAYDRTIKVWDLQKGFCTNTIIFHSNCNSLCFSMDGQTICSGHVDGNLRLWDIQTGKLLSEVAAHSLAVTSIS VSRNGSVVLTSGRDNLHNLFDMRSLEVCGTLRATGNRVASNWSRSCISPDDNYVAAGSADGSVHIWSISQGDIVSTLKEHTAPVLCCSWSGLGKPLASSD KNGIIYTWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50230			Transducin/WD40 repeat-like su...		Potri.015G087200 [exp]	0	1
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Potri.017G139700 [exp]	2.23	0.8133
AT3G54360			zinc ion binding (.1)		Potri.001G036400 [exp]	2.23	0.8379
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Potri.010G194600 [exp]	5.09	0.7884	PtrProT2
AT3G02070			Cysteine proteinases superfami...		Potri.014G140200 [exp]	6.32	0.7747
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.018G121200 [exp]	7.21	0.7631
AT5G11440		CID5, IPD1	INCREASED POLYPLOIDY LEVEL IN ...		Potri.006G246600 [exp]	10.58	0.8023
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Potri.003G117000 [exp]	10.95	0.8028	Pt-PAK.1
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.007G081000 [exp]	13.85	0.8229	SK3
AT4G39870			TLD-domain containing nucleola...		Potri.007G092700 [exp]	15.09	0.7065
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.012G119600 [exp]	16.37	0.8134

Compare expression of checked genes

Potri.015G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.