Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61640 261 / 8e-90 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) AT4G25130 254 / 2e-86 PMSR4 peptide met sulfoxide reductase 4 (.1) AT5G07470 245 / 3e-83 PMSR3, ATMSRA3 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) AT5G07460 244 / 1e-82 PMSR2, ATMSRA2 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, peptidemethionine sulfoxide reductase 2 (.1) AT2G18030 108 / 5e-30 Peptide methionine sulfoxide reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G091100 [exp] 337 / 8e-120 AT5G61640 251 / 9e-86 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.015G112268 [exp] 254 / 3e-86 AT4G25130 351 / 4e-123 peptide met sulfoxide reductase 4 (.1) Potri.012G115800 [exp] 253 / 1e-85 AT4G25130 351 / 3e-123 peptide met sulfoxide reductase 4 (.1) Potri.007G012900 [exp] 112 / 1e-30 AT2G18030 361 / 2e-127 Peptide methionine sulfoxide reductase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033039 [exp] 310 / 5e-109 AT5G61640 256 / 6e-88 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Lus10043002 [exp] 261 / 1e-88 AT4G25130 346 / 5e-121 peptide met sulfoxide reductase 4 (.1) Lus10032504 [exp] 259 / 5e-88 AT4G25130 348 / 6e-122 peptide met sulfoxide reductase 4 (.1) Lus10013673 [exp] 226 / 2e-76 AT5G07470 185 / 4e-60 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) Lus10041922 [exp] 107 / 1e-28 AT2G18030 370 / 9e-131 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10028467 [exp] 105 / 4e-28 AT2G18030 364 / 1e-128 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10019755 [exp] 97 / 2e-23 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01625 [poplar] [flax] PMSR Peptide methionine sulfoxide reductase
Representative CDS sequence Show only first row Show all	>Potri.015G087600.1 pacid=42775604 polypeptide=Potri.015G087600.1.p locus=Potri.015G087600 ID=Potri.015G087600.1.v4.1 annot-version=v4.1 ATGGCAACCAGCACCACCAATCCTGCTCTGGATCCGGATCTAGACCAGCCAGACAACCCGAATCACGAGTTCGCTCAATTCGGAGCTGGATGTTTCTGGG GGGTTGAGCTTGCCTTTCAGAGACTGCCTGGTGTGGTCAAAACTGAAGTGGGCTACTCTCAGGGTCACGTCCCTGACCCAACTTACAAGCTGGTATGCAC CAACACCACCAACCACGTTGAAGTTGTTCGTGTCCAATTTGACCCGGAAGTTTGCCCATATACCAACCTCCTCTCTCTTTTCTGGTCTCGACATGATCCT ACCACCCTCAATCGCCAGGGTGGTGATGTTGGTACACAGTATAGATCAGGGATTTACTACTACAATGAGGCCCAAGCTAAGTTAGCCCAGGAATCAAAGG AAGCTAAGCAGTTGGAATTGAAGGATAGCAAGGTTGTGACAGAAATTCTGCCAGCAAAGAGATTTTTCAGAGCTGAAGAGTACCATCAGCAGTATCTGGA GAAAGGTGGAGGTCAAGGTGTTAAACAGTCTGCTGAAAAAGGTTGCAATGACCCTATTAGATGCTATGGTTAA
AA sequence Show only first row Show all	>Potri.015G087600.1 pacid=42775604 polypeptide=Potri.015G087600.1.p locus=Potri.015G087600 ID=Potri.015G087600.1.v4.1 annot-version=v4.1 MATSTTNPALDPDLDQPDNPNHEFAQFGAGCFWGVELAFQRLPGVVKTEVGYSQGHVPDPTYKLVCTNTTNHVEVVRVQFDPEVCPYTNLLSLFWSRHDP TTLNRQGGDVGTQYRSGIYYYNEAQAKLAQESKEAKQLELKDSKVVTEILPAKRFFRAEEYHQQYLEKGGGQGVKQSAEKGCNDPIRCYG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Potri.015G087600 [exp]	0	1
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Potri.006G051100 [exp]	29.59	0.9010	Pt-GUN5.1
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.005G010266 [exp]	37.46	0.8964
AT2G42130			Plastid-lipid associated prote...		Potri.006G192200 [exp]	81.97	0.8839
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.005G130400 [exp]	103.70	0.8791	Pt-PSBO.1
AT4G28706			pfkB-like carbohydrate kinase ...		Potri.002G254500 [exp]	109.74	0.8728
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Potri.005G106400 [exp]	112.47	0.8745
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.004G229600 [exp]	143.11	0.8640
AT5G48790			Domain of unknown function (DU...		Potri.003G100300 [exp]	150.95	0.8621
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.018G127100 [exp]	187.16	0.8394	Pt-CBP1.4
AT1G54740			Protein of unknown function (D...		Potri.013G027100 [exp]	188.08	0.8322

Compare expression of checked genes

Potri.015G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.