Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38040 352 / 6e-119 Exostosin family protein (.1) AT4G16745 217 / 5e-65 Exostosin family protein (.1.2) AT5G11610 195 / 7e-57 Exostosin family protein (.1.2) AT3G07620 192 / 4e-56 Exostosin family protein (.1) AT5G03795 191 / 3e-55 Exostosin family protein (.1) AT5G11130 185 / 1e-53 Exostosin family protein (.1) AT4G32790 186 / 3e-53 Exostosin family protein (.1) AT5G25820 186 / 1e-52 Exostosin family protein (.1) AT5G19670 181 / 3e-51 Exostosin family protein (.1) AT5G25310 177 / 2e-50 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G116800 [exp] 452 / 3e-158 AT4G38040 333 / 4e-111 Exostosin family protein (.1) Potri.007G058400 [exp] 366 / 2e-124 AT4G38040 649 / 0.0 Exostosin family protein (.1) Potri.005G147500 [exp] 363 / 2e-123 AT4G38040 653 / 0.0 Exostosin family protein (.1) Potri.012G091600 [exp] 309 / 3e-104 AT4G38040 195 / 7e-60 Exostosin family protein (.1) Potri.007G117800 [exp] 290 / 5e-95 AT4G38040 385 / 4e-132 Exostosin family protein (.1) Potri.019G036500 [exp] 248 / 1e-77 AT4G38040 275 / 9e-88 Exostosin family protein (.1) Potri.007G117600 [exp] 243 / 3e-77 AT4G38040 341 / 5e-115 Exostosin family protein (.1) Potri.001G072500 [exp] 204 / 7e-61 AT4G38040 232 / 2e-71 Exostosin family protein (.1) Potri.014G170900 [exp] 203 / 1e-60 AT3G07620 572 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002664 [exp] 379 / 2e-129 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10012723 [exp] 376 / 2e-128 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 203 / 1e-59 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 202 / 2e-59 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10008751 [exp] 198 / 6e-58 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 189 / 2e-56 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10001917 [exp] 191 / 2e-55 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10011120 [exp] 183 / 2e-52 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10025178 [exp] 182 / 2e-52 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10011121 [exp] 181 / 2e-52 AT5G19670 730 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.015G087900.12 pacid=42776574 polypeptide=Potri.015G087900.12.p locus=Potri.015G087900 ID=Potri.015G087900.12.v4.1 annot-version=v4.1 ATGCCTCCTCTAAAAGCACTTGCCGCCTTGGTCATCTTTTTGGGCATAGCCTCGATCCTGTTGCAGCAAAGGTATTGGTTACCACTCTCTTCTAAGGGAA AATCAACTCTATATGGACTTCAACAGTCTACTGCTGGCGTCCATCACTCTGAAGAGTTTTTCTTGCTGAATTATGAGGCAATGGAGAAGGATTTAAAGGT CTTTGTGTACCCAGGTGGAAACCCAAAAACGTGTTATCACTCAATAGATAAGAAGCTCAAGAGCAATTATGCAAGTGAGCATTATTTCTTCATGAATCTG AGAAACGGTTCGTTTTTGACTGAGAATCCTGATGAGGCTCATCTCTTCTTTATTCCCCTTTCTTGTCAGCCAATGGAAGACCAGGATGCTTTACCTCGTT ATAAGGAGATGGTTATCCAGAACTATGTCCGCGCCTTAACTATCAAATACCCTTACTGGAATAGGACTTTAGGCGCTGATCACTTTTTTGTCAGTTGCCA TGGCATTGGCAACAGGGCTACTGCTGCTTTCCCATTTCTCCTGAAGAACGCAATTCGACTTGTGTGTTCACCAAGCTATGATTCCAACTATATTCCACAT AAGGATGTTTCCCTCCCACAGATACTGGAGCTCTCTTTTCCTCCTGAAGGAGATGGCATGTGGAACGACTCAACTATGGAGTCTCTCCCTATCCAGCTAT CCCCAGTGGAGACTCACCCTTCCAGGACTAAACTTTGTTTCTGGGCTGGTTCTCCCAACTCAGAAGTAAGAAAGAATCTTCGAGTTCATTATAAAGGTTT AGAAGAATTTGAGATCCATTTCGTCGAGAATGTTAAAAGGGCATTGGTGCTAGATACTTTTCAAAAGGAGATACATAGGAGTAAGTTTTGCATCTGTCCT CGTGGGAAGACTCAAGTCGGTGGTGTTTGCTTAGCAGAGTCGATGGCTTTTGGATGTGTACCTGTTATCATGTCCGACTACTATGACTTGCCATTCAATG ACATCCTTGACTGGAATGCATTCTCTGTAATTCTCAAAGAGCATGATGTTCCCATAATGGGGGAGATTCTCAAAGGCATACCAGAAGATATGTTCGAGAA AATGCGTCAAAATGTTCTCAAGGTTAGCAAGTACTTCAAGTGGCATTTTCGTCCTGTCAAGTATGACGAGTTTCACATGGTAATGTATGAGCTATGGAAG CGCCGCCATATCATTAGGTACTGA
AA sequence Show only first row Show all	>Potri.015G087900.12 pacid=42776574 polypeptide=Potri.015G087900.12.p locus=Potri.015G087900 ID=Potri.015G087900.12.v4.1 annot-version=v4.1 MPPLKALAALVIFLGIASILLQQRYWLPLSSKGKSTLYGLQQSTAGVHHSEEFFLLNYEAMEKDLKVFVYPGGNPKTCYHSIDKKLKSNYASEHYFFMNL RNGSFLTENPDEAHLFFIPLSCQPMEDQDALPRYKEMVIQNYVRALTIKYPYWNRTLGADHFFVSCHGIGNRATAAFPFLLKNAIRLVCSPSYDSNYIPH KDVSLPQILELSFPPEGDGMWNDSTMESLPIQLSPVETHPSRTKLCFWAGSPNSEVRKNLRVHYKGLEEFEIHFVENVKRALVLDTFQKEIHRSKFCICP RGKTQVGGVCLAESMAFGCVPVIMSDYYDLPFNDILDWNAFSVILKEHDVPIMGEILKGIPEDMFEKMRQNVLKVSKYFKWHFRPVKYDEFHMVMYELWK RRHIIRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38040			Exostosin family protein (.1)		Potri.015G087900 [exp]	0	1
AT1G11390			Protein kinase superfamily pro...		Potri.011G041500 [exp]	7.93	0.7774
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.002G191700 [exp]	12.40	0.7478
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	15.00	0.7625
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.008G070900 [exp]	16.73	0.7047
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.019G042300 [exp]	18.65	0.7560
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.019G076600 [exp]	20.00	0.7476
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Potri.002G243900 [exp]	21.63	0.7378
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Potri.002G156000 [exp]	24.89	0.7187
AT3G03620			MATE efflux family protein (.1...		Potri.015G139400 [exp]	44.74	0.7345
AT2G24800			Peroxidase superfamily protein...		Potri.006G267400 [exp]	48.57	0.7401

Compare expression of checked genes

Potri.015G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.