Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24790 664 / 0 AAA-type ATPase family protein (.1.2) AT2G02480 330 / 2e-96 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 323 / 3e-94 AAA-type ATPase family protein (.1) AT5G45720 272 / 5e-77 AAA-type ATPase family protein (.1.2) AT4G18820 267 / 7e-75 AAA-type ATPase family protein (.1) AT1G21690 71 / 1e-12 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 46 / 0.0001 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G24290 44 / 0.0005 AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G091700 [exp] 1475 / 0 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.003G044900 [exp] 330 / 3e-96 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.004G230300 [exp] 328 / 2e-95 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.004G061700 [exp] 277 / 5e-78 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 265 / 1e-73 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.005G181300 [exp] 65 / 9e-11 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 53 / 5e-07 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.011G023800 [exp] 44 / 0.0005 AT1G24290 689 / 0.0 AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013665 [exp] 893 / 0 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10033035 [exp] 890 / 0 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10042401 [exp] 315 / 1e-90 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10005422 [exp] 271 / 1e-76 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 263 / 6e-74 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10007316 [exp] 263 / 1e-73 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 260 / 2e-72 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10026270 [exp] 203 / 2e-53 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10028543 [exp] 61 / 3e-09 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10025689 [exp] 56 / 1e-07 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13177 [poplar] [flax] DNA_pol3_delta2 DNA polymerase III, delta subunit
Representative CDS sequence Show only first row Show all	>Potri.015G088100.5 pacid=42775876 polypeptide=Potri.015G088100.5.p locus=Potri.015G088100 ID=Potri.015G088100.5.v4.1 annot-version=v4.1 ATGGCAGATGGGCGGCGACATTCTGTTGATATTCCCATCACAAGAACCCTTATAGCCCTTAGGAGAGTGAGGTCACTAAGGGATCCCTCAACCAATTCTA TGAGCAAATTCTCTGCTTTATTGGAAAATGCCAACTGGGAAACGAATTCCACCAAAGATATATCTTTACAGTCTGCCAATGGTTCCAAAGAAGGTGGATC AAACCATAATCGTGTTTCGGGATGGAAAAATTTAGGTCTTGATGGACAGAGTAAGCAACAAGTTGATAATTTTGATTCCGGAAGTGATTTTGAAAAATCC AAGTTAATTTTCGGTGACAGTTTGGGTGGAGTGAAAAATATGGATGCTCATTTTAGGAACAAAAAGGTGGAAGGATTGGATAGTTGTAAGGAAGAGATTA ATGGAACCATGTCGTTGAGTGAAGTGTATTATGGCAGTCACAGGAACAAGGAGCTGGACTTGGTATGCATCACACCTTCGAGTAATCATTTGGAGGATGT GGATTCAACTAATGGACCCATTGCAGGATCTCTACTAGGAGACAGTACAGACCAGTCTGTGACAAGACGAAAATCTCGATACAAAAATCAAGTCCAGTCA TACGGTGGGGTGGGTGACATTTTGAGTCGTGTAGGTAGTCCATGCTTTTCTGGCAGTGATGCCTTCTCAAGCCAAGGCACATCATTGTTTGCAAACAAAG AGGCTGATTTCATGGTTCAAAAAGACCACGGATGTGGGATAAGCTGCTGCTGGACAAGAACCCCAAGACTCAGAGATTCAAACCCATATTCTGATGCTGA AGGCAATCCATTGTTGTCCAGGGATGTAGCTGAGACAAGCCCTTGTGGGAAGAGGAGCTGGAAGCATGCTACAAATGAAACTCCTAGGAGTTTGAGTCAG AAATTTAGGCCAAAATCTTTTGACGAGCTGGTGGGACAAGGTGTAGTGGCAAGGTCTCTTTTGGGTGCCATTTCTAGAGGAAGGATAACCTCTTTATATC TCTTCCATGGTCCTCGTGGCACTGGCAAGACCTCTGCCTCAAAGATATTTGCTGCTGCCCTGAATTGCCTCTCACATGAGGAGAACAAGCCATGTGGTCT CTGCCGAGAATGTTATGTGTTCTTTTCTGGAAGGAGCCAGGATGTGAAAGAAGTGGACTCTGTGAGAATTAATCAGACCAGAAGGATTAGATCCCTTATC AAGGATGCATCAATGCCACCGATTTCATCACGTTTCAAAGTTTTCATTGTTGACGAGTGTCATTTGTTGCATGGAGAGACATGGGCAATTGTTTTGAATA GCCTAGAGAACCTTTCTGAAAATGTTGTCTTTGTAATGATCACTCCTGAACTGGATATGCTACCGAAAAGTGCAGTCACTCGGTCTCAAAAGTATCATTT TCCAAAGATAAAAGAAGCTGATATAGCTGGCAGATTAAGGAATATCTGTGTTGAAGAAGCCCTTGACTTTGATCAGGTTGCCTTGGACTTCATTGCGACT AAGTCAAGTGGTTCCCTTAGGGATGCAGAAATTATGCTTGATCAATTGAGTTTGCTCGGTAAAAGAATCACAATGACCATGGTCCATGAGCTTATTGGAG TTGTTTCTGATGATGAATTGCTTGGCTTGCTGGATCTGGCTTTGTCATCTGATACTTCAAGCACTGTTATAAGAGCCAGGGAGTTGATGAGGTCCAGGAT TGATCCTATGCAACTTGTATCTCAGCTGGCAAATCTCATAATGGATGTTCTTGCTGGTAAATGCAAAGATGATAGTTCTGAAGTCAGAAGAAAGTTTTCA AGGAAGCATTCTTCTGAAGGGGACATGCAGAGACTGAGTCATGCCCTGAAGATACTTTCTGAAAGTGAGAAGCAACTGAGAATGTCAAGAAACCAAAGTA CATGGCTCACGGCAGCTCTCCTGCAGTTGAGCTCACTGGAAGCCTCGGCTGTGGATGTGAATGATTCAAAGTCTTCAATCAGAAATGGGCATGACAGAGA TGGAGGCTTTTCCAGCACACCATCCACTGGGGAGAGCTTGAAGCATCTTGCCCTGTATTCATGTGAAGACAGTAAGTTGCAAAAATCACAAGTCCAAGGG GGTTGTCAAGCGACATTAGATACTATATGGAAGAGAACTAGTGAATTATGCCAATCAAATTCACTCAGGAATTTCCTAAGGAAACAAGGGAAACTATCTT CTCTTCATATTAATAGAGGTCTGGCAGTAGCTGAATTGGAATTCCATCATTCTGACTATGCATCCAAGGCTGAAAAGTCATGGAAGCTTATTGCAAGTTT GCTGCAAACAATTTTGGGTTGTAATGTTGAAATTCGGATCAATCTTGTACTTTGTACTCCTCCTGCATCGAAATGTGCCAAACTATGGAAGCAATCTTTT TGTTTTTTTGGTTGTTCTCGGAGAATGAGGCACAAATCACAACCACCCATTGAATGTGGCATTGACTCCGACTACTCTGATCACATCTCTGAAAGGCCTA TGATAAGAGAGAGAGCTATTTCAGCCTGTCCCTCTGATTCTCGATCCCAGATACCACACAACTGTTATCACAGAGCGGAAGTAGTGAGGGCTCTAAGAAA CAGTGAAGGGAATGTGCTGAGCATAGGGACAACCTCATCTCTCAGATCACTTCATGATGATACATCTAAAACCCCTGGGTATGGATTTTCTTCTTCAAAG GCTGGGGGAAACGACCTTGACTATACAGTTTTCTCTAGTCAAGAGGCTGAGGATCAGCCGAACTGCTTTCCTAAAAGTCTCAGACTGCAAAAGATGATAC GTTCTTCAGAGAATACTCAAGTGGTTTGTATAGGTAATCATCAAGAGAAGCAGATGGGAAGAAGAAACCTATTGAAACATGCACTAAAGCCAATGATTCA TATGTTTTGA
AA sequence Show only first row Show all	>Potri.015G088100.5 pacid=42775876 polypeptide=Potri.015G088100.5.p locus=Potri.015G088100 ID=Potri.015G088100.5.v4.1 annot-version=v4.1 MADGRRHSVDIPITRTLIALRRVRSLRDPSTNSMSKFSALLENANWETNSTKDISLQSANGSKEGGSNHNRVSGWKNLGLDGQSKQQVDNFDSGSDFEKS KLIFGDSLGGVKNMDAHFRNKKVEGLDSCKEEINGTMSLSEVYYGSHRNKELDLVCITPSSNHLEDVDSTNGPIAGSLLGDSTDQSVTRRKSRYKNQVQS YGGVGDILSRVGSPCFSGSDAFSSQGTSLFANKEADFMVQKDHGCGISCCWTRTPRLRDSNPYSDAEGNPLLSRDVAETSPCGKRSWKHATNETPRSLSQ KFRPKSFDELVGQGVVARSLLGAISRGRITSLYLFHGPRGTGKTSASKIFAAALNCLSHEENKPCGLCRECYVFFSGRSQDVKEVDSVRINQTRRIRSLI KDASMPPISSRFKVFIVDECHLLHGETWAIVLNSLENLSENVVFVMITPELDMLPKSAVTRSQKYHFPKIKEADIAGRLRNICVEEALDFDQVALDFIAT KSSGSLRDAEIMLDQLSLLGKRITMTMVHELIGVVSDDELLGLLDLALSSDTSSTVIRARELMRSRIDPMQLVSQLANLIMDVLAGKCKDDSSEVRRKFS RKHSSEGDMQRLSHALKILSESEKQLRMSRNQSTWLTAALLQLSSLEASAVDVNDSKSSIRNGHDRDGGFSSTPSTGESLKHLALYSCEDSKLQKSQVQG GCQATLDTIWKRTSELCQSNSLRNFLRKQGKLSSLHINRGLAVAELEFHHSDYASKAEKSWKLIASLLQTILGCNVEIRINLVLCTPPASKCAKLWKQSF CFFGCSRRMRHKSQPPIECGIDSDYSDHISERPMIRERAISACPSDSRSQIPHNCYHRAEVVRALRNSEGNVLSIGTTSSLRSLHDDTSKTPGYGFSSSK AGGNDLDYTVFSSQEAEDQPNCFPKSLRLQKMIRSSENTQVVCIGNHQEKQMGRRNLLKHALKPMIHMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24790			AAA-type ATPase family protein...		Potri.015G088100 [exp]	0	1
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.014G032600 [exp]	7.48	0.8282
AT3G49900			Phototropic-responsive NPH3 fa...		Potri.005G149400 [exp]	7.74	0.8355
AT2G23440			unknown protein		Potri.007G041400 [exp]	12.00	0.8192
AT2G43990			unknown protein		Potri.007G145400 [exp]	15.81	0.8066
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	18.16	0.8206	ACR4.3
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	22.44	0.8090
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	28.35	0.8147
AT3G30300			O-fucosyltransferase family pr...		Potri.004G113200 [exp]	31.74	0.7785
AT2G36026	OFP		Ovate family protein (.1)		Potri.006G205400 [exp]	34.29	0.7960
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	34.87	0.8092

Compare expression of checked genes

Potri.015G088100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.