Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24800 1009 / 0 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G63190 989 / 0 MA3 domain-containing protein (.1.2) AT3G48390 900 / 0 MA3 domain-containing protein (.1) AT1G22730 586 / 0 MA3 domain-containing protein (.1) AT5G57870 61 / 3e-09 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT4G30680 52 / 4e-07 Initiation factor eIF-4 gamma, MA3 (.1) AT2G24050 53 / 6e-07 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G091900 [exp] 1251 / 0 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.005G199200 [exp] 692 / 0 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1) Potri.002G061800 [exp] 71 / 5e-15 AT1G22730 74 / 4e-17 MA3 domain-containing protein (.1) Potri.018G104100 [exp] 65 / 1e-10 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 62 / 9e-10 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 61 / 2e-09 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 59 / 9e-09 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018085 [exp] 1076 / 0 AT4G24800 995 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10042080 [exp] 1040 / 0 AT4G24800 974 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10011324 [exp] 626 / 0 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1) Lus10012205 [exp] 442 / 3e-149 AT1G22730 560 / 0.0 MA3 domain-containing protein (.1) Lus10012204 [exp] 100 / 3e-24 AT1G22730 117 / 1e-30 MA3 domain-containing protein (.1) Lus10010782 [exp] 66 / 7e-11 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035812 [exp] 58 / 2e-09 AT2G24050 228 / 3e-71 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10022168 [exp] 61 / 3e-09 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 58 / 3e-08 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10042856 [exp] 54 / 4e-07 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02847 [poplar] [flax] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Potri.015G088300.3 pacid=42776239 polypeptide=Potri.015G088300.3.p locus=Potri.015G088300 ID=Potri.015G088300.3.v4.1 annot-version=v4.1 ATGGCGACGAGTGAGGGGTTTCTGACGGATGAGCAGAGGGAAATGTTGAAAACAGCGAGTCAAAATGCAGATAATTTGTTGTCTTCGTCTCCCAAGGGTT TGTTCCCATCCCCATTGTTCTCTGACCATCACTTAAAAGTTCCTGCTGCGGGGAAATCCGGTACTGCTGGGATTGCGGTGAGGCATGTCAGGAGATCACA CTCGGGGAAGCATGTGCGTGTTAAGAAAGATGGCGGCGGTGGCAAGGGAACATGGGGAAAACTGCTTGACACTGATGTTGAATCCCATATTGATCGAAAT GATCCTAACTATGATAGTGGAGAGGAGCCGTATCAGCTTGTTGGGGCAACCATCTCAGATCCTTTAGATGACTATAAGAAGGCTGTTGTTTCAATAATAG AGGAGTACTTTAGTACTGGTGATGTGGAAGTGGCTGCATCTGACCTCAGAGAGCTTGGGTCTAGCAATTATCATCTGTACTTTATCAAGCGACTTGTTTC CATGGCCATGGACAGGCATGATAAGGAGAAGGAAATGGCTTCAGTTCTGCTTTCTGCACTGTATGCTGATGTCATCAGCCCATCCCAGATTAGGGATGGA TTTGTCATACTTCTAGAGTCCGCTGATGATCTTGCAGTTGACATACTGGATGCAGTTGACATCCTTGCTTTGTTTGTAGCTCGTGCTGTGGTCGATGATA TCCTTCCTCCCGCTTTCCTCACCAGAGCAAAGAAGGCCCTACCAGAATCCTCAAAGGGATTTCAAGTTCTGCAAACTACTGAAAAGAACTATCTTTCAGC CCCACACCATGCAGAACTTGTGGAGAGGAGGTGGGGTGGAAGCACCCACATCACTGTTGAGGAAGTGAAGAAAAAAATCACTGATCTGTTGAGGGAATAT GTGGAGAGTGGAGATGCTGTTGAAGCCTGCAGGTGCATAAGGGAGTTAGGGGTTTCATTCTTTCATCATGAGGTTGTTAAGAGGGCTTTGGTTCTTGCCA TGGAGATCCGAACTGCAGAACCACTTATATTGAAGCTATTGAAGGAAGCTTCTGAAGAAGGCCTGATAAGTTCCAGTCAAATGGCAAAGGGCTTTGCTCG ATTGGAAGAGAGTCTTGATGACCTTGCTCTTGACATTCCATCTGCAAAATCCTTGTTTCAATCCCTCGTCCCCAAGGCTATCTCTGAAGGATGGCTTGAT GCTTCGTTCATGAAATCTTCAGGTGAAGATGGACAGGCACAAGCTGAAGATGGGAAAGTAAAGCGGTTTAAGGAAGAGGTTGTGACAATAATTCATGAGT ATTTTCTCTCAGATGACATCCCTGAATTGATTCGAAGTCTTGAAGATCTCGGAATGCCTGAGTTTAACCCGATTTTCCTGAAAAAGCTCATCACCCTAGC CATGGACAGGAAGAATAGGGAGAAGGAAATGGCATCTGTGCTGCTTTCAGCTCTTCACATTGAGATATTTTCAACTGAAGATATAGTTAATGGTTTCATC ATGCTTCTTGAATCTGCAGAAGATACAGCGCTGGACATTCTGGATGCTTCAAATGAGCTTGCACTCTTTCTTGCCAGGGCTGTGATTGATGACGTCTTGG TTCCTTTGAATCTAGAGGAGATAGGCAGCAAGTTGCAACCAAATTGCAGTGGAAGCGAGACAGTGCGCATGGCTCGATCACTTATTGCTGCCCGTCATGC TGGTGAGAGGCTCTTGAGGTGCTGGGGAGGTGGGACTGGCTGGGCTGTGGAAGATGCAAAGGATAAGATATTGAAGCTACTGGAGGAGTATGAGAGCGGG GGTGTTCTGGGAGAAGCCTGCCAATGTATTCGTGACCTTGGAATGCCCTTCTTTAACCACGAGGTGGTGAAGAAGGCGTTGGTCATGGCAATGGAGAAGA AGAATGACAGGATGCTGGATCTGCTTCAAGTTTGTTTCAATGAAGGCCTGATCACAATCAATCAGATGACCAAAGGCTTCACCCGTATCAAGGATGGGAT GGATGATCTGGCTCTCGACATTCCGAATGCAGAGGAGAAATTTAATTTCTATGTGGAGTATGCTCAGAAGAAGGGGTGGCTGCTAGCATCTTTTGGGTCA TCTGTTGGAGACGGCTCCTCAAAAGCGGTGGCGGCTACTTGA
AA sequence Show only first row Show all	>Potri.015G088300.3 pacid=42776239 polypeptide=Potri.015G088300.3.p locus=Potri.015G088300 ID=Potri.015G088300.3.v4.1 annot-version=v4.1 MATSEGFLTDEQREMLKTASQNADNLLSSSPKGLFPSPLFSDHHLKVPAAGKSGTAGIAVRHVRRSHSGKHVRVKKDGGGGKGTWGKLLDTDVESHIDRN DPNYDSGEEPYQLVGATISDPLDDYKKAVVSIIEEYFSTGDVEVAASDLRELGSSNYHLYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPSQIRDG FVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKALPESSKGFQVLQTTEKNYLSAPHHAELVERRWGGSTHITVEEVKKKITDLLREY VESGDAVEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEASEEGLISSSQMAKGFARLEESLDDLALDIPSAKSLFQSLVPKAISEGWLD ASFMKSSGEDGQAQAEDGKVKRFKEEVVTIIHEYFLSDDIPELIRSLEDLGMPEFNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFI MLLESAEDTALDILDASNELALFLARAVIDDVLVPLNLEEIGSKLQPNCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKILKLLEEYESG GVLGEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQVCFNEGLITINQMTKGFTRIKDGMDDLALDIPNAEEKFNFYVEYAQKKGWLLASFGS SVGDGSSKAVAAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Potri.015G088300 [exp]	0	1
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.004G182800 [exp]	55.09	0.7776
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003100 [exp]	76.81	0.7973
AT1G60010			unknown protein		Potri.010G095400 [exp]	106.44	0.7684
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.010G104500 [exp]	128.45	0.7812
AT5G25160	C2H2ZnF	ZFP3	zinc finger protein 3 (.1)		Potri.018G123800 [exp]	202.28	0.7582
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.006G023700 [exp]	245.17	0.7385
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.011G134100 [exp]	274.65	0.7414

Compare expression of checked genes

Potri.015G088300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.