Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24480 302 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 296 / 7e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G01710 105 / 6e-26 methyltransferases (.1) AT2G16030 95 / 2e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26730 74 / 6e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G53400 49 / 1e-06 unknown protein AT5G03190 45 / 3e-05 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052100 [exp] 308 / 1e-106 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G152100 [exp] 92 / 4e-22 AT2G16030 225 / 1e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G128100 [exp] 79 / 1e-16 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.019G125300 [exp] 77 / 1e-16 AT2G16030 197 / 2e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G153300 [exp] 77 / 7e-16 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G105100 [exp] 75 / 3e-15 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.006G128800 [exp] 65 / 6e-12 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 58 / 1e-09 AT3G53400 420 / 6e-144 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013662 [exp] 301 / 2e-103 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036941 [exp] 299 / 1e-102 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 291 / 1e-99 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 229 / 5e-73 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10012217 [exp] 100 / 8e-24 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10039718 [exp] 96 / 8e-24 AT2G16030 267 / 7e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001267 [exp] 99 / 3e-23 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10018506 [exp] 91 / 7e-22 AT2G16030 269 / 9e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014232 [exp] 92 / 3e-21 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10022682 [exp] 76 / 1e-15 AT5G01710 698 / 0.0 methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.015G088400.1 pacid=42775909 polypeptide=Potri.015G088400.1.p locus=Potri.015G088400 ID=Potri.015G088400.1.v4.1 annot-version=v4.1 ATGAACACCACCATTAATCCAAAACTACCTTTCATTATCAAACCCTTCCTTCTCTCCCTCTTGCTCTCTCTTACGGTCCTCATCTTCATTGCCTTACAAA CTCCCCACCACCGCAAAACCACCCCACAACAACCAAACAACATCTCCTCCAAGAGCGGTGGTGGCCTTCGTATCCGGCCGGGGTATTCTTCTTACGATGA ATACATTCAGCGACAACTCAACAAAACCCTAAACCCTAAACTCCGGCAGATATGGACAACACGGGATTGGGAGCGTAAAGTCCGCGTGTTTGCCCAGTTT TTTGAGTCTTTAAAGCGAAGAAACCTCTTGCTTAACAGTTCAAAGGCATTATCGATCGGTGCTCGTGTGGGGCAAGAAGTGTCGGCTCTAAAAAGTATAG GCGTGAACGACTCGATCGGCATTGACTTGGTACCTTACCCGCCACTTGTAGTGAAAGGAGATTTCCATGCACAGCCTTTCATGAACGACACTTTTGATTT TGAGTTCTCTAATGTGTTTGATCATGCCTTGTATCCGTGGAAATTTGTTGGGGAGATCGAGCGGACGTTGAAGCCTGGTGGAGTTTGTGTTGTACACGTG GCGTTATCAAGACGGGCCGATAAATATTCAGCTAATGATTTGTATAGTGTGGGGCCATTGGTTGAGCTGTTTAAAGACTCCCAGTTGGTGGAGGTTCGGA AGGTTGACGGGTTTGGGCTTGATACTGAGGTGGTCTTTAGGAAAAACAAAAGGAGAAATATTTAA
AA sequence Show only first row Show all	>Potri.015G088400.1 pacid=42775909 polypeptide=Potri.015G088400.1.p locus=Potri.015G088400 ID=Potri.015G088400.1.v4.1 annot-version=v4.1 MNTTINPKLPFIIKPFLLSLLLSLTVLIFIALQTPHHRKTTPQQPNNISSKSGGGLRIRPGYSSYDEYIQRQLNKTLNPKLRQIWTTRDWERKVRVFAQF FESLKRRNLLLNSSKALSIGARVGQEVSALKSIGVNDSIGIDLVPYPPLVVKGDFHAQPFMNDTFDFEFSNVFDHALYPWKFVGEIERTLKPGGVCVVHV ALSRRADKYSANDLYSVGPLVELFKDSQLVEVRKVDGFGLDTEVVFRKNKRRNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24480			S-adenosyl-L-methionine-depend...		Potri.015G088400 [exp]	0	1
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.007G138500 [exp]	12.00	0.8389
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.010G236300 [exp]	14.73	0.9056
AT4G29790			unknown protein		Potri.001G055625 [exp]	19.33	0.9011
AT4G29790			unknown protein		Potri.001G055650 [exp]	35.49	0.8634
					Potri.016G124501 [exp]	122.13	0.8161
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.001G234500 [exp]	149.66	0.8271
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.011G047700 [exp]	184.55	0.8164
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Potri.010G237600 [exp]	196.36	0.8069
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080000 [exp]	243.92	0.7734
AT1G02800		ATCEL2	cellulase 2 (.1)		Potri.003G147600 [exp]	265.20	0.7636

Compare expression of checked genes

Potri.015G088400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.