Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 154 / 3e-44 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45170 71 / 2e-13 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G56500 61 / 4e-10 haloacid dehalogenase-like hydrolase family protein (.1) AT4G21470 60 / 7e-10 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT4G11570 45 / 3e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G095200 [exp] 163 / 5e-48 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G003916 [exp] 90 / 8e-23 AT3G48420 87 / 2e-22 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G112500 [exp] 75 / 5e-15 AT5G45170 386 / 2e-133 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.005G183400 [exp] 62 / 1e-10 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.002G077200 [exp] 61 / 3e-10 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.013G007800 [exp] 60 / 1e-09 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G104366 [exp] 45 / 5e-05 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.018G092500 [exp] 44 / 5e-05 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G127100 [exp] 44 / 7e-05 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013663 [exp] 436 / 1e-154 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 436 / 2e-154 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10000633 [exp] 155 / 8e-45 AT4G39970 427 / 1e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10023149 [exp] 154 / 2e-44 AT4G39970 423 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016820 [exp] 111 / 1e-30 AT3G48420 105 / 4e-29 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040631 [exp] 77 / 2e-15 AT5G45170 427 / 3e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018280 [exp] 75 / 1e-14 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018906 [exp] 61 / 3e-10 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 59 / 1e-09 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10029840 [exp] 58 / 6e-09 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.015G088500.2 pacid=42775431 polypeptide=Potri.015G088500.2.p locus=Potri.015G088500 ID=Potri.015G088500.2.v4.1 annot-version=v4.1 ATGGCATCATCATCAACAACTACCATCTCTCTTTCCTTAGCTACATTGTCTTCTACTACTGCCACTGCTTCTTCCTCAATAACCCAAACTAAGACTTCCT CCATTTGCAGCTTCAGATCCCATGAAAGGACTTTATCTTCTTCGCTACTGGGCACAAGAATACGTGTCTATAACAAAACAACAAGAACAAGAGTGGTGGA AAAGAGTAGCACTTCGAACGGGACCACTTGCTTAGCTTCATCTTCTGTTCTTCCATCAGCTCTTCTCTTTGATTGTGATGGCGTGCTTGTTGATACTGAG AAAGATGGCCACAGGATTTCTTTCAATGATACTTTCAATGAAAGAGAACTGGGAGTAACCTGGGATGTGGATTTGTATGGCGAGTTGCTCAAAATAGGAG GTGGAAAAGAGAGGATGACAGCCTACTTTAACAAGACTAGGTGGCCGGAAAAAGCTCCCAAGAGTGAAGTAGAGAGAAAGGAATTTATAGCTTCACTTCA TAAGCGAAAGACAGAGCTGTTCATGGCCCTTATTGAGAAGAAATTGTTACCTCTTCGACCAGGCGTTGCAAAGCTGATTGATCAGGCTCTCGGAAAAGGA GTAAAAGTTGCTGTCTGCAGCACTTCTAATGAAAAGGCGGTCTCTGCGATAGTTTCGTTTCTGCTGGGGGCTGAACGAGCAGAAAAGATCAAGATATTTG CAGGAGATGTTGTTCCACGCAAAAAGCCTGACCCGGCCATTTATACATTAGCAGCCAACACTCTGGGTGTTGATCCTTCAAGCTGTGTAGTGGTGGAGGA CAGTGCAATAGGTCTTGCAGCTGCCAAAGCTGCTGGAATGAAGTGTATAGTAACAAAGAGCGGTTACACAGCTGACGAGGACTTCTTAAATGCCGACGCG GTCTTTGATTGCATTGGGGATCCTCCAGAGGAGTGTTTCGACTTGGCCTTCTGTGGAAGTCTTCTTGAAAAGCAGTATGTCAGCTAG
AA sequence Show only first row Show all	>Potri.015G088500.2 pacid=42775431 polypeptide=Potri.015G088500.2.p locus=Potri.015G088500 ID=Potri.015G088500.2.v4.1 annot-version=v4.1 MASSSTTTISLSLATLSSTTATASSSITQTKTSSICSFRSHERTLSSSLLGTRIRVYNKTTRTRVVEKSSTSNGTTCLASSSVLPSALLFDCDGVLVDTE KDGHRISFNDTFNERELGVTWDVDLYGELLKIGGGKERMTAYFNKTRWPEKAPKSEVERKEFIASLHKRKTELFMALIEKKLLPLRPGVAKLIDQALGKG VKVAVCSTSNEKAVSAIVSFLLGAERAEKIKIFAGDVVPRKKPDPAIYTLAANTLGVDPSSCVVVEDSAIGLAAAKAAGMKCIVTKSGYTADEDFLNADA VFDCIGDPPEECFDLAFCGSLLEKQYVS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48420			Haloacid dehalogenase-like hyd...		Potri.015G088500 [exp]	0	1
AT1G65230			Uncharacterized conserved prot...		Potri.013G085300 [exp]	1.00	0.9893
AT3G50685			unknown protein		Potri.007G027400 [exp]	2.00	0.9828
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	2.44	0.9848
AT3G61080			Protein kinase superfamily pro...		Potri.002G153100 [exp]	3.16	0.9826
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.002G180400 [exp]	3.87	0.9832	TMP14.1
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.013G112900 [exp]	6.70	0.9777
AT2G36145			unknown protein		Potri.006G210000 [exp]	8.36	0.9795
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.013G026400 [exp]	8.48	0.9795
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.008G151600 [exp]	8.48	0.9803	PSAD1.2
AT3G29670		PMAT2	phenolic glucoside malonyltran...		Potri.004G096132 [exp]	10.00	0.9721

Compare expression of checked genes

Potri.015G088500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.