Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70500 323 / 8e-107 Pectin lyase-like superfamily protein (.1) AT5G39910 318 / 4e-106 Pectin lyase-like superfamily protein (.1) AT1G23460 321 / 6e-106 Pectin lyase-like superfamily protein (.1) AT1G80170 320 / 6e-106 Pectin lyase-like superfamily protein (.1) AT5G14650 319 / 9e-106 Pectin lyase-like superfamily protein (.1) AT3G57510 314 / 8e-104 ADPG1 Pectin lyase-like superfamily protein (.1) AT1G02460 311 / 1e-101 Pectin lyase-like superfamily protein (.1) AT4G35670 304 / 3e-100 Pectin lyase-like superfamily protein (.1) AT3G15720 305 / 8e-100 Pectin lyase-like superfamily protein (.1.2) AT5G27530 301 / 2e-98 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G463000 [exp] 338 / 8e-113 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 333 / 1e-110 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 331 / 7e-110 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 329 / 8e-109 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 323 / 2e-106 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 321 / 6e-106 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 313 / 1e-102 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.018G028700 [exp] 311 / 3e-102 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 311 / 1e-101 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030602 [exp] 328 / 3e-108 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 305 / 2e-99 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 303 / 7e-99 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 296 / 4e-97 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 295 / 2e-96 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10029121 [exp] 295 / 1e-95 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 295 / 7e-95 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 291 / 4e-94 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 290 / 8e-94 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 290 / 1e-93 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.015G088600.2 pacid=42774926 polypeptide=Potri.015G088600.2.p locus=Potri.015G088600 ID=Potri.015G088600.2.v4.1 annot-version=v4.1 ATGGCAAAATATTTCTTGCTTCTTCTCGTTTTAATTCTTGGTGAAGCTACTTCAACTCAATCTCGAAGCTTACGAAGCTGTAATCAAGTTTACAATGTGA TTGATTATGGAGCTGTTGGAGACGGGGATACTGATGATACCCAGGCCTTCAAGGATGCATGGAAGGATGTGTGCAAGTCTTCATCATGCTCAGTACCGAT CATACAAGTTCCTAGTGGCAAATCATTCTTGCTCCAGCCCTTGACCTTCAATGGCGAATGCAAACCCGATCAGATTATTTTCCAAATTGATGGAACGATG AAGGCACCGAGTGATCCCAGTGACTGGAAATGCCAAGAACACAGATATTGTAAGCAATGGATTACCTTTGATGAGGTTGATAACCTTACGATTCGTGGAT CCGGTACCATGGATGGTCAAGGATCAACATGGTGGGAACGTCATTCCTCTTGTAAAGATCACAAGCATAGAGATAGAAGAGTTTGCGGTAGAAAACCAAC GGGTTTAGTAATATCACACTCCCAGAATGTTCATCTCGAGGGCTTGACGTTCAAGGACAGTCCACAGATGCATATGGCTTTTGAGAGATCCGAGTGGGTG TATGCTTCTAACCTCACTATCCAAGCCCCTGGAGATAGCCCCAACACCGATGGAATTCATCTCCAGCATGCCAAAAATATCTTTATAGATTATAGTCGCA TCATGACTGGTGATGATTGTATCTCGATCGGGGACGGTTCATCCCAAATTAATATTACCCGTATTGCATGTGGTCCGGGTCACGGAATAAGCATTGGGAG TCTAGGAATAGATGGAGAAAGTGAGACAGTAGAAGATGTCCATGTTAGCGACGTTGTATTTACAGAAACTACAAATGGGGCCAGGATAAAGACTTGGCAG GGTGGAAAAGGGTTTGCTAGAAACATTGTCTTCGAAAACATAAGGTCTGAGGGTGCAAGAAACCCTATAATTATCGACCAATATTATTGTGATCATAAAC ATTGCACAGATCATAGTTCAGCAGTAGAGATTAGCAAGATTCGATTTGAAAATATATACGGGACATCCCACAGAAAACCCGCTGTGCATATTGCTTGCAG CAAGTCAGTGCCGTGCACTGATATCGTGCTCAGCAATGTTCATTTGGAGGCAGCAGACGACGGCGACGGCGACGACGGTGATGAGCCATCTACATATTGT GCGAATGTTCAAGGACATGCAATGGGCCGTGTCTTTCCACCACTCACCTGCCTGTCTTAA
AA sequence Show only first row Show all	>Potri.015G088600.2 pacid=42774926 polypeptide=Potri.015G088600.2.p locus=Potri.015G088600 ID=Potri.015G088600.2.v4.1 annot-version=v4.1 MAKYFLLLLVLILGEATSTQSRSLRSCNQVYNVIDYGAVGDGDTDDTQAFKDAWKDVCKSSSCSVPIIQVPSGKSFLLQPLTFNGECKPDQIIFQIDGTM KAPSDPSDWKCQEHRYCKQWITFDEVDNLTIRGSGTMDGQGSTWWERHSSCKDHKHRDRRVCGRKPTGLVISHSQNVHLEGLTFKDSPQMHMAFERSEWV YASNLTIQAPGDSPNTDGIHLQHAKNIFIDYSRIMTGDDCISIGDGSSQINITRIACGPGHGISIGSLGIDGESETVEDVHVSDVVFTETTNGARIKTWQ GGKGFARNIVFENIRSEGARNPIIIDQYYCDHKHCTDHSSAVEISKIRFENIYGTSHRKPAVHIACSKSVPCTDIVLSNVHLEAADDGDGDDGDEPSTYC ANVQGHAMGRVFPPLTCLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70500			Pectin lyase-like superfamily ...		Potri.015G088600 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211866 [exp]	4.00	1.0000
AT4G02270		RHS13	root hair specific 13 (.1)		Potri.002G201800 [exp]	5.19	0.9116
					Potri.001G426850 [exp]	5.91	0.9569
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.016G135900 [exp]	6.00	1.0000
AT5G61620	MYB		myb-like transcription factor ...		Potri.001G080300 [exp]	7.48	0.9339
AT1G64870			unknown protein		Potri.014G054900 [exp]	7.74	0.9043
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.013G060332 [exp]	9.48	0.8211
AT5G27660			Trypsin family protein with PD...		Potri.018G001550 [exp]	9.94	0.8917
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.001G356000 [exp]	12.32	0.7512
					Potri.018G064450 [exp]	16.12	0.6757

Compare expression of checked genes

Potri.015G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.