Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23620 396 / 3e-139 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027714 [exp] 462 / 2e-165 AT3G23620 455 / 2e-162 Ribosomal RNA processing Brix domain protein (.1) Lus10035575 [exp] 462 / 3e-165 AT3G23620 449 / 4e-160 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [poplar] [flax] IIaaRS-ABD PF04427 [poplar] [flax] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Potri.015G088700.1 pacid=42776317 polypeptide=Potri.015G088700.1.p locus=Potri.015G088700 ID=Potri.015G088700.1.v4.1 annot-version=v4.1 ATGTTGAAGGTTAAAACCCCAAAGTACGGAAGAGTCAAGCGAGAGCTTGAAAAACGAGAACCAAAACTTGTTGAGTTGGCGAAGAAGACACTGATACTAC AAGGAACAAAAACAAGCAATGTTTTGAATACTGTATTGAGTGAAATATATCATCTCAAGAGAGATAACGCAATTCGATATACGCGTAAGAATGACAGTAT AAGGCCTTTTGAGTCCGGTGGCGAAACTTCTTTGGAGTTCTTTTCTTTGAAAACCGATTGCAGTATCTTTGTGTATGGTTCCACCTCAAAGAAACGTCCT GACAATCTTGTCATAGGGCGAACATATGACCACCACATATATGATCTTATAGAAGTTGGGGTTGAAAATTTTAAACGAATGGATTCCTTCACTTATGATA AGAAACTAGCTCCACAAGCAGGATCAAAACCTTTCATTGTTTTTAGTGGAGAAGCATTTGAGAGTGTAGATGAGTTGAAACATCTGAAGGAAGTTTTGCT TGAGCTTTTAAGGGGAGAGGTTGTGGATAATTTGAATCTTGCTGGGCTGGGCCGTGTTTATGTATGTACAGCTATATCTTCAAATCGGGTGTTCCTCACT CACTGTGCAATGCGGCTAAAAAAGTCTGGCACAATAGTCCCAAGGATAGAACTGGTAGAAATCGGCCCTTCCATGGATTTTGTAGTTCGTCGTCATCGTC TTCCTAATGAAAGCTTAAGGAAAGAAGCCATGAAAACTGCTAAAGATAAGCTTCATAAGAAGATTAAAAATGTTAGTAAAGATGCTCTACAAGGGAAGCT TGGAAAGATTTATGTACCTGATCAAAAGGTTGGAGAGATGCCGCTACCTAACAAAGCTAAAGGAGTGAAGAGAGAGCGCCGTGAAGCTAAAGTGAAGAAC TCAAATAATGAGCGCGCATCAAAAAAGCAGAAAGAAGATTCTTAG
AA sequence Show only first row Show all	>Potri.015G088700.1 pacid=42776317 polypeptide=Potri.015G088700.1.p locus=Potri.015G088700 ID=Potri.015G088700.1.v4.1 annot-version=v4.1 MLKVKTPKYGRVKRELEKREPKLVELAKKTLILQGTKTSNVLNTVLSEIYHLKRDNAIRYTRKNDSIRPFESGGETSLEFFSLKTDCSIFVYGSTSKKRP DNLVIGRTYDHHIYDLIEVGVENFKRMDSFTYDKKLAPQAGSKPFIVFSGEAFESVDELKHLKEVLLELLRGEVVDNLNLAGLGRVYVCTAISSNRVFLT HCAMRLKKSGTIVPRIELVEIGPSMDFVVRRHRLPNESLRKEAMKTAKDKLHKKIKNVSKDALQGKLGKIYVPDQKVGEMPLPNKAKGVKRERREAKVKN SNNERASKKQKEDS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	0	1
AT2G34570		MEE21	maternal effect embryo arrest ...		Potri.004G197200 [exp]	2.23	0.8654
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.006G157400 [exp]	3.00	0.8721
AT1G14810			semialdehyde dehydrogenase fam...		Potri.008G135700 [exp]	3.87	0.8217
AT1G25260			Ribosomal protein L10 family p...		Potri.011G156300 [exp]	4.47	0.8715
AT5G09270			unknown protein		Potri.007G102600 [exp]	5.47	0.8406
AT3G15460			Ribosomal RNA processing Brix ...		Potri.011G122200 [exp]	6.48	0.8551
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Potri.003G158800 [exp]	6.48	0.8077
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	6.48	0.8622
AT5G02050			Mitochondrial glycoprotein fam...		Potri.016G102200 [exp]	8.00	0.8513	SDH4.2
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	9.94	0.8377

Compare expression of checked genes

Potri.015G088700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.