Potri.015G089000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48430 807 / 0 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
AT5G04240 449 / 3e-133 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
AT5G46910 260 / 1e-72 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
AT2G34880 200 / 2e-52 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
AT1G30810 192 / 7e-50 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
AT4G20400 177 / 1e-44 PKDM7B, JMJ14 JUMONJI 14 (.1.2)
AT1G08620 168 / 8e-42 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
AT1G63490 144 / 2e-34 transcription factor jumonji (jmjC) domain-containing protein (.1)
AT2G38950 124 / 1e-28 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
AT4G06634 60 / 6e-09 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G092400 2792 / 0 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Potri.008G037800 342 / 1e-95 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Potri.010G224700 340 / 4e-95 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Potri.003G096100 260 / 7e-72 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Potri.001G137700 254 / 3e-70 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Potri.001G440900 182 / 4e-46 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2)
Potri.013G046700 181 / 1e-45 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
Potri.019G018700 180 / 2e-45 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
Potri.011G155100 166 / 3e-41 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019482 1476 / 0 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Lus10043332 1351 / 0 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Lus10009218 337 / 1e-93 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Lus10037989 335 / 1e-93 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Lus10030988 260 / 3e-72 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Lus10035385 257 / 3e-71 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Lus10008063 183 / 9e-47 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
Lus10042566 169 / 2e-41 AT3G04490 1382 / 0.0 unknown protein
Lus10022024 167 / 5e-41 AT3G04490 1370 / 0.0 unknown protein
Lus10008495 144 / 5e-34 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.015G089000.1 pacid=42775133 polypeptide=Potri.015G089000.1.p locus=Potri.015G089000 ID=Potri.015G089000.1.v4.1 annot-version=v4.1
ATGGCAGCTCCAAGTGGGTTAAGTTTAGACCCACCACAACCTCCAACAACTACAGAAGTATGTCAATGGCTAAAGAACTTACCTTTAGCACCTGAATACC
GTCCAACACTATCTGAATTCCAAGATCCAATTGCTTACATTTTCAAAATTGAAAAAGAAGCTTCTCAATATGGAATCTGCAAAATTATCCCTCCTGTCTT
ACCCTCTGCTAAAAAAACCACTCTTTCTAATCTCAACCGCTCTCTCTGCGCCCGTAACGGTGGTTCTTCCGCCCCCACATTCACCACACGACAGCAGCAG
ATCGGATTTTGCCCCAGGAAACCCCGCCCTGTTCAAAAACCCGTGTGGCAGAGCGGGGAGACCTACACATTTCAAGAATTTGAAACCAAGGCTAGAACCT
TTGAGAAGAATTACTTGAAGAAGTTCTTTAAGAAGGGAGCTCTTTCTCCATTAGAAATTGAAACCCTTTATTGGAAAGCTACTTTAGATAAGCCTTTTTC
TGTAGAATATGCGAATGATATGCCTGGTTCTGCGTTTTCTCCGAGGAAAAAGGAGGGACAAGGAGGGGTTGCTGGGGAGGGAATGAGTGTGGGGGATACT
GAGTGGAATATGAGGGGAGTTTCAAGGGCAAAAGGGTCCTTGTTGAGGTTTATGAAGGAGGAAATACCTGGGGTTACTTCGCCTATGGTTTATGTTGGGA
TGATGTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATTTGCATAGCTTAAATTATATGCATATGGGTGCTGGGAAGACTTGGTATGGTGTGCCTAG
AGAGGCTGCTGTTGCATTTGAGGAAGTTGTTAGGGTTCATGGGTATGGCGGAGAGATTAATCCTCTTGTTACATTTGCTGTTCTTGGTGAGAAGACGACA
GTAATGTCACCTGAAGTATTTATCAGTGCAGGTGTACCATGCTGCAGGTTAGTCCAAAATGCTGGGGAATTTGTGGTCACCTTCCCAAGAGCCTATCATT
CAGGGTTCAGTCATGGATTCAATTGCGGGGAGGCAGCCAATATTGCAACGCCTGAATGGTTGATGGTTGCTAAAGATGCTGCTATTCGAAGAGCTTCAAT
CAATTACCCTCCTATGGTGTCTCATTTCCAGTTACTGTATGATCTTGCACTCGAATTTTGTACAAGAATACCCATGAACATCATTGCTAAACCACGGAGT
TCAAGACTGAAAGATAAGCAAAAGGGTGAAGGAGAAATGCTGGTTAAAGAGCAATTTGTGAAAAATATGATACAGAATAATGACCTGCTTCATATTCTTG
GAAAAGGATCTTCAGTGGTGCTTCTTCCACGAGGTTCTTCAGACATTTCTGTTTGTTCAAAATTACGAGTTGGATCCCAGTTAAGAGACAACCCCACCCT
TGGATTATGCAGCCAGAAGGATGTTATGAAATCCTCAAAAAGCTCAGGTTCTGGTGACATCTTGCAGGACAAGAACCAGGAAATCAATCAAGTGAAAGGC
ATCTTTTCAGTGAAAGCAAAGTTTGCTTCTTTGTGTGAAAGGAATAGATTTTCCACATTAAATGGAAATGAATGCTCACAGAGTATGAACATAGGCACTG
AAAGAGGTCGTTCCATTCATGGTGATAAGTTGTCAGATCAGAGACTGTTTTCATGCGTCACATGCGGGATATTGAGCTTTGATTGCCTTGCCATCATTCA
ACCAAAGGAAGCAGCTTCTAGATACCTCATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGCCGTTGGTTCTGGAGTAACTAGGGATGTTTTTGCTGTT
GCTGGTGGGATTGCAAACATTTCTGAGCAGAATTCCTCAAGGTGGGTGGAAAAGAATACCGCGGCTGGTTTTTATGACGTCCCTGTTCAATCTCCTAATT
ACCAAATTCAGATGGCAGATCAAGGTGTTGAAGTGGCTTCCAGCTCTGCAAAACAGTTAGAGGCTTCTGCTCTTGGCCTGTTAGCTTTGAATTATGGAAA
TTCTTCTGACTCTGAGGAAGATCAGGTTGAAGCAGATCTATCTCACCATGATGAAATTAACATGACAAACTGTCCATTAGAAAACAAATATCAGTGTCAG
AGTTCCGCCTTCCCTTCTTACAAGCAGAAGGACTATGATGCTGCAACCGGTGGTCTCCCTCAATCTCCATCAAGACTTGATGAGCGGGATGATGTTCCTC
TCAAAGCTAATGATATGAATCCAGAACATGGAGATAGACGAGATGATTTCAAGGATAAAACTGATGAGTGTTCTTTTGGCTTCCCAACCGGTAACCTTGC
TTCAATTGAATCAAACAGTTTGGATGGTAGATACAGAGATCCGATGTCAATGTCACACGTGTCTTTAAATTGTTCCCCAATTGTCCATGATATTGAAAAA
ACAAAGTTCAACAGGCCTATTGCACCAATAGAGAATCCAGACATGCCATTTACCCAAAGATCTGACAAAGATTCTTCATGCATGCATGTGTTCTGTCTTG
AGCATGCTGTAGAAATAGAACAGCAACTTCGTCAAATTGGTGGAGTACATATATTGCTTCTCTGTCATCCAGAGTATCCCAGGATTGAAGGGGAGGCAAA
GTTAGTGTCAGAAGAACTGGGGATTGATCATCTATGGAATGACATCACTTTCAGGGATGCTGCCAAAGAGGACGAGGAGAGGATCCAGTCAGCTTTGGAT
AGTGAGGAAGCCATACCAGGGAGTGGGGACTGGGCTGTAAAGTTGGGGATCAATCTCTTTTTCAGTGCCAACCTCAGCCGATCTCCTTTTTATAGTAAGC
AGATGCCATACAATTCTGTTATATACAATGCGTTTGGTCTTGCTTCTTCAGTTAGCTCGACCCCAAAATTCAAGGTGTATGGAAGGAGGTCTGGCAAACC
AAAAAAAGTTGTGGCTGGGAAATGGTGTGGAAAAGTTTGGATGTCAAATCAAGTTCATCCCTTTCTAGTGATAAGTGATCATGTGGATCAAGATCATGAA
CAAGAACAAGAAAGAAGCTTCCATGCTTCGGCAACACCAGATGAAAAGCTTGAGAAAAAACCACAAACCAGCAACAAAACTGAAACCACTAGAAAATCTG
GGAGGAAGAGGAAAATAACAGCAGGGAGTCGATCGATTAAGAAAGTAAAGTGTCTGGAAGCAGAAGAACCGGATTCAGAAGACTCGATGGGGGATAATTG
TCATAGGCAGCGTGTGAGGTGCAGGCGCAAATGGGCCAAATCTGTTGAGAGTGATGATGCAGTTTCAGATGATCCATTAGCAGAGCATGTTCGTCAGCAG
TATAGGAGAATGCGTAGAAGCAAGCAAGCCAAATCTATCAAGAGGGAAAATACTGTTTCTTATGCTTCAGTGGAGAACAAGTTTCAAAAGCAGCTTAAGA
GAGCTCACAGGAGTGACCGAGCCAAATTTTTTGAGAGACGATCTGCAGCTTCTGATAACTCACTGGATGATAATAGTGATCAGTGGCATGAGAGAGCTCC
AAGAAGCACACAAGCAAAATATACTGAGAGTGAAGATGCATTTTCAGATGATTCACCAGAGGAGAGTTCTCGTTGGCTACATGGGAGGGTTCCTAAGAGC
AAACAATTGAAATATATTGACAAGGAAGGTGTGATTTCAGATGATTCAATGGAGAGTGACTCTCATCAGCACAACAGGAGGGTATCTAGAGGCAAGCGAG
CCCAACTTATTAAAAGGAACGATGTGGTTTCTGATGATTCATTGGATGAAAGTGCATATCAGCGGCTCCCGAGATTTTCTAGAAGCAAGCTAGCCAAATT
AATTGAGAGGGAAAATGCAGTTTCGGATGATTCATTGGACGACAATATCCATCAGCATCATGGAAGGGTTCTTAAAAGCAAGCAAGCCAAATTTGTTGAA
GGGGAAGATGCAATTTCAGACGATTCTCATGAGGACAATACTGACTGGCAGCGCAAAAGAATTCCTAGAAGCAAAATGGCCAAATTTGTTGAGAGTGAAG
ATGCAGCTTCAGATGATCTGCAGGAAGATGATACCCATGAGCATCGCAGAAGAATTCCAAAAAGCAAAAAGATGAACTTTATTGAGAGGGAAGTTGTAAT
TTCTGATGATCTGTGGGAGAATAATACTCATCGGCACCCTAGGAAGGCTCCTAGAAGCAAGCAAGCCAGATTTATTGAGAGGGAAGATCTTGTTTCAGAT
GACTTGCTGGAGGATAATTCTGATCAGCAGCAGAAGAGGATTCTTCGAAGCAAGCAGAAGAAATCTGCAACACTTTGCCAAATGAAACAAGGGACTCGGA
AACCAAAGCACATTGCCCCCAAGATGATAAAAAAAGAAACCCTGAAATTAATAAAACAAGAGAGGCAAATAAAGCAAGAGACTCCTCAGCAACGTATTGG
TAAAAGTGAGCTGAATGCTAGGCAGTTTGATTCACATTCTGAAGAGGGGGTAGAAGGTGGACCTAGCACGCGCCTTAGGAAAAGACCCTCAAAGCCTCCA
AAACAGTTGGAAACAAAGCTGAAAGAAAAGCAACAAAACAGTAGGAAAAAACTGAAGGATGCTTCAGCAGTGAAGGCTCCAGTTGGCAGAAAGAATGTTA
AAATAAAAGATGAGGAAGCAGAATATCAGTGTGACATTGACGGGTGCACAATGAGTTTTGGATCAAAACAAGAGCTTGCAATGCACAAAAGAAACATTTG
TCCAGTCAAGGGGTGTGGAAAGAAGTTCTTCTCACACAAATATTTAGTTCAGCATCGCCGAGTCCACATAGATGACCGCCCTCTCAAGTGCCCTTGGAAG
GGATGCAAGATGACGTTCAAGTGGGCATGGGCCCGGACAGAACATATCAGGGTTCACACAGGTGAGCGTCCATATGTGTGTGCTGAGGAAGGCTGTGGAC
AAACATTCAGATTTGTGTCAGATTTCAGTCGTCACAAGCGTAAGACTGGTCATTCGGCAAAGAAAAGCAGGGGGTAA
AA sequence
>Potri.015G089000.1 pacid=42775133 polypeptide=Potri.015G089000.1.p locus=Potri.015G089000 ID=Potri.015G089000.1.v4.1 annot-version=v4.1
MAAPSGLSLDPPQPPTTTEVCQWLKNLPLAPEYRPTLSEFQDPIAYIFKIEKEASQYGICKIIPPVLPSAKKTTLSNLNRSLCARNGGSSAPTFTTRQQQ
IGFCPRKPRPVQKPVWQSGETYTFQEFETKARTFEKNYLKKFFKKGALSPLEIETLYWKATLDKPFSVEYANDMPGSAFSPRKKEGQGGVAGEGMSVGDT
EWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVGMMFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPREAAVAFEEVVRVHGYGGEINPLVTFAVLGEKTT
VMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLMVAKDAAIRRASINYPPMVSHFQLLYDLALEFCTRIPMNIIAKPRS
SRLKDKQKGEGEMLVKEQFVKNMIQNNDLLHILGKGSSVVLLPRGSSDISVCSKLRVGSQLRDNPTLGLCSQKDVMKSSKSSGSGDILQDKNQEINQVKG
IFSVKAKFASLCERNRFSTLNGNECSQSMNIGTERGRSIHGDKLSDQRLFSCVTCGILSFDCLAIIQPKEAASRYLMSADCSFFNDWAVGSGVTRDVFAV
AGGIANISEQNSSRWVEKNTAAGFYDVPVQSPNYQIQMADQGVEVASSSAKQLEASALGLLALNYGNSSDSEEDQVEADLSHHDEINMTNCPLENKYQCQ
SSAFPSYKQKDYDAATGGLPQSPSRLDERDDVPLKANDMNPEHGDRRDDFKDKTDECSFGFPTGNLASIESNSLDGRYRDPMSMSHVSLNCSPIVHDIEK
TKFNRPIAPIENPDMPFTQRSDKDSSCMHVFCLEHAVEIEQQLRQIGGVHILLLCHPEYPRIEGEAKLVSEELGIDHLWNDITFRDAAKEDEERIQSALD
SEEAIPGSGDWAVKLGINLFFSANLSRSPFYSKQMPYNSVIYNAFGLASSVSSTPKFKVYGRRSGKPKKVVAGKWCGKVWMSNQVHPFLVISDHVDQDHE
QEQERSFHASATPDEKLEKKPQTSNKTETTRKSGRKRKITAGSRSIKKVKCLEAEEPDSEDSMGDNCHRQRVRCRRKWAKSVESDDAVSDDPLAEHVRQQ
YRRMRRSKQAKSIKRENTVSYASVENKFQKQLKRAHRSDRAKFFERRSAASDNSLDDNSDQWHERAPRSTQAKYTESEDAFSDDSPEESSRWLHGRVPKS
KQLKYIDKEGVISDDSMESDSHQHNRRVSRGKRAQLIKRNDVVSDDSLDESAYQRLPRFSRSKLAKLIERENAVSDDSLDDNIHQHHGRVLKSKQAKFVE
GEDAISDDSHEDNTDWQRKRIPRSKMAKFVESEDAASDDLQEDDTHEHRRRIPKSKKMNFIEREVVISDDLWENNTHRHPRKAPRSKQARFIEREDLVSD
DLLEDNSDQQQKRILRSKQKKSATLCQMKQGTRKPKHIAPKMIKKETLKLIKQERQIKQETPQQRIGKSELNARQFDSHSEEGVEGGPSTRLRKRPSKPP
KQLETKLKEKQQNSRKKLKDASAVKAPVGRKNVKIKDEEAEYQCDIDGCTMSFGSKQELAMHKRNICPVKGCGKKFFSHKYLVQHRRVHIDDRPLKCPWK
GCKMTFKWAWARTEHIRVHTGERPYVCAEEGCGQTFRFVSDFSRHKRKTGHSAKKSRG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G48430 JUMONJI JMJ12, REF6 Jumonji domain-containing prot... Potri.015G089000 0 1
AT2G40030 NRPE1, DMS5, AT... DEFECTIVE IN MERISTEM SILENCIN... Potri.003G196900 4.00 0.8383
AT1G19290 Pentatricopeptide repeat (PPR)... Potri.014G040200 4.24 0.8676
AT3G48430 JUMONJI JMJ12, REF6 Jumonji domain-containing prot... Potri.012G092400 5.83 0.8049
AT5G19420 Regulator of chromosome conden... Potri.009G071800 6.00 0.8012
AT5G46070 Guanylate-binding family prote... Potri.011G058500 7.93 0.7969
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Potri.011G094100 8.00 0.8439
AT4G33495 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, U... Potri.015G141700 12.84 0.8364
AT3G60400 Mitochondrial transcription te... Potri.014G044900 13.26 0.8085
AT3G50370 unknown protein Potri.005G137700 13.63 0.8406
AT3G19840 ATPRP40C pre-mRNA-processing protein 40... Potri.010G170400 18.81 0.8287

Potri.015G089000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.