Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63260 373 / 7e-126 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 370 / 1e-124 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 221 / 2e-67 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 214 / 3e-65 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT3G06410 212 / 3e-63 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G18550 206 / 6e-61 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G47850 196 / 4e-57 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT1G04990 187 / 1e-54 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 174 / 2e-48 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) AT2G32930 172 / 3e-48 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G092500 [exp] 613 / 0 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.014G159500 [exp] 231 / 1e-70 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.013G086800 [exp] 229 / 8e-70 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.002G223700 [exp] 227 / 6e-69 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.019G053200 [exp] 221 / 7e-67 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 213 / 9e-64 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 210 / 3e-62 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G080300 [exp] 178 / 4e-50 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.010G176300 [exp] 169 / 2e-46 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043330 [exp] 394 / 9e-133 AT5G63260 357 / 3e-119 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10019481 [exp] 365 / 2e-121 AT5G63260 339 / 6e-112 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020196 [exp] 223 / 2e-67 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 220 / 2e-66 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10035330 [exp] 204 / 4e-60 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10033962 [exp] 200 / 2e-58 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10015156 [exp] 193 / 2e-56 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 192 / 4e-55 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10007941 [exp] 181 / 1e-51 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 179 / 9e-51 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.015G089100.1 pacid=42775660 polypeptide=Potri.015G089100.1.p locus=Potri.015G089100 ID=Potri.015G089100.1.v4.1 annot-version=v4.1 ATGGAACAACAAATTGAATTACCAATCCAAATTCAAACCGAAATCCCTCAATTAGGGCTCCAACCTTCTTCTTCACCTCATTCTTCTCATCCAGGTACCT CTCCGTCGTCCGAACCTGATCAAACGGCCCAGGATGACGATAACTATCTTCATCAAGAGCTACAGAACCAGCTCGACTTGAGAGAGGAGTTTAAAGAATT GAATGATTTTCATGAAGAAGAGGAGGAGGAGGAGGAATTTAAGAGTGAAGAGAGAGATAAAAAGAGTGAATTTTTTTATGAGAATGACAACGAGAGCAGT GAGAAGGAAGGTGATGATTTAGAGAAGAAGAATGAAAGAAGTGATGAAAATGCTAATAACAATAGAAGGTATCATCAGTATCCGGTGAGACCTGAAGCAG AGGATTGTGCCTTTTATATGAAGACTGGGACTTGCAAATTTGGAGTTAATTGCAAGTTCAATCATCCTGTTAGAAGGAAAAATCAGGCTGTCAAGGAGAA CGTGAAGGAAAGGGAAGAAGCAACAGAGAAGCCTGGCCAGACTGAATGCAAGTACTACCTGAGGACAGGAGGCTGTAAGTATGGAAAAGCTTGTAGGTTC AACCACACAAGAGAAAAAACTTTTTCAGTGCCCCCGCTGAAGACACCAATGCCATCAATTTTAGAGCTGAACTTTCTGGGCCTGCCAATCCGTCCGGGAG AGAAACAGTGCGAGTTTTACATGCGTAATGGTTCCTGCAAGTATGGAGCTACCTGCAAGTATAATCATCCAGATCCTATGGCTGTGGGAGGAAGTGACCT GACTTCGGCATTTGTTAATGGGGGAACTACTTCTCTACCAGCTCCATCACCATCAAGTGTAGGTTCTTGGTCTTCACCGAGGGCATTAAACGATCCTACA CCCTTTGTGCCATATGTGTTTTCACCAACTCGACTTCCTTCTCAAAGTTCAGAGTGGAATGGATATCAGGGTACTCTATACCCTCCTGAAAGAAGTCTGC ATCCACCTCCATCTTATGCCATGAGCAACCCAGCAACTGAAAGTAATGTATATGCACCTCAGCAACAGCAAACAGTAGTTGATGAATTCCCAGAACGACC TGGCCAACAACTGTGCAGTTACTTCATGAAATTCGGGGACTGTAAGTTCAAATCTAACTGCAAATATCACCATCCAAAGAATCGGATACCAAAGTCACCC TCATTAACTCTTAGTGACAAGGGCCTGCCACTGAGACCTGATCAAATCATCTGCTCTTACTACAGCCGCTATGGTATCTGTAAGTTTGGGCCTGCCTGTA AATTTGATCATTCAATACAACCGCCTTCATCAGGATCTGGTGATGATCAGCACACTGCCTTTGGCAACTCTGTGACCCAGGAAAAGGCTAGAATGGCTGA AAGCGGAAATGGAAGTGATATTTCGGTTGAGCAGCCTGTGTAA
AA sequence Show only first row Show all	>Potri.015G089100.1 pacid=42775660 polypeptide=Potri.015G089100.1.p locus=Potri.015G089100 ID=Potri.015G089100.1.v4.1 annot-version=v4.1 MEQQIELPIQIQTEIPQLGLQPSSSPHSSHPGTSPSSEPDQTAQDDDNYLHQELQNQLDLREEFKELNDFHEEEEEEEEFKSEERDKKSEFFYENDNESS EKEGDDLEKKNERSDENANNNRRYHQYPVRPEAEDCAFYMKTGTCKFGVNCKFNHPVRRKNQAVKENVKEREEATEKPGQTECKYYLRTGGCKYGKACRF NHTREKTFSVPPLKTPMPSILELNFLGLPIRPGEKQCEFYMRNGSCKYGATCKYNHPDPMAVGGSDLTSAFVNGGTTSLPAPSPSSVGSWSSPRALNDPT PFVPYVFSPTRLPSQSSEWNGYQGTLYPPERSLHPPPSYAMSNPATESNVYAPQQQQTVVDEFPERPGQQLCSYFMKFGDCKFKSNCKYHHPKNRIPKSP SLTLSDKGLPLRPDQIICSYYSRYGICKFGPACKFDHSIQPPSSGSGDDQHTAFGNSVTQEKARMAESGNGSDISVEQPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.015G089100 [exp]	0	1
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	6.24	0.7480
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G061500 [exp]	7.74	0.7345
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.019G128800 [exp]	10.95	0.6677
AT5G09850			Transcription elongation facto...		Potri.019G003900 [exp]	13.96	0.7071
AT5G63550			DEK domain-containing chromati...		Potri.015G100700 [exp]	14.83	0.7325
AT2G30530			unknown protein		Potri.013G160100 [exp]	18.97	0.7010
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	20.78	0.7365
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.002G045900 [exp]	23.55	0.7043	HAG906,HAT1.6
AT3G60400			Mitochondrial transcription te...		Potri.014G044900 [exp]	27.38	0.7269
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.005G215800 [exp]	36.98	0.6899

Compare expression of checked genes

Potri.015G089100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.