Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATGSL08.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36850 336 / 3e-106 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1) AT3G07160 219 / 2e-65 CALS9, ATGSL10 glucan synthase-like 10 (.1) AT2G31960 76 / 1e-15 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT1G05570 73 / 9e-15 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT5G13000 72 / 3e-14 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G13680 68 / 5e-13 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT3G59100 60 / 4e-10 ATGSL11 glucan synthase-like 11 (.1) AT1G06490 55 / 2e-08 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT3G14570 54 / 3e-08 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G14780 46 / 8e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089300 [exp] 427 / 2e-138 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.001G011900 [exp] 212 / 4e-63 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.001G012200 [exp] 72 / 3e-14 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 68 / 4e-13 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 64 / 2e-11 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G230000 [exp] 62 / 6e-11 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.011G095100 [exp] 61 / 1e-10 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.005G203500 [exp] 58 / 1e-09 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 57 / 3e-09 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040892 [exp] 374 / 5e-127 AT2G36850 1026 / 0.0 CHORUS, glucan synthase-like 8 (.1) Lus10014796 [exp] 370 / 2e-118 AT2G36850 2935 / 0.0 CHORUS, glucan synthase-like 8 (.1) Lus10032463 [exp] 218 / 4e-65 AT3G07160 3063 / 0.0 glucan synthase-like 10 (.1) Lus10042959 [exp] 213 / 5e-63 AT3G07160 2760 / 0.0 glucan synthase-like 10 (.1) Lus10002097 [exp] 77 / 7e-16 AT2G13680 1916 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10013744 [exp] 76 / 1e-15 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 76 / 1e-15 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10037469 [exp] 64 / 2e-11 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10003920 [exp] 63 / 3e-11 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10001424 [exp] 63 / 4e-11 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G089500.3 pacid=42775156 polypeptide=Potri.015G089500.3.p locus=Potri.015G089500 ID=Potri.015G089500.3.v4.1 annot-version=v4.1 ATGTCCCGGGTTACCAATAATTGGGAGAGGTTAGTGGGAGCGACGTTGAAGCGAGAACTCGGTCAAGGTCATGAGAGAACGTCCAGTGGCATCGCCGGAG CTGTGCCACCTTCGCTTGCCCGTACGACCATTATTGACGCGATTTTGCAGGCTGCCGATGAGATTCAAGATGAGGACCCTAACGTTGCCAGAATTTTGTG TGAGCAAGCATATAGCATGGCACAAAATTTGGACCCAAGCAGTGATGGTCGTGGTGTTCTCCAATTCAAGACCGGTTTGATGTCTGCTATTACGCAAAAA CTTGCCAGAAGGGACGGTGCCCGTATAGATCGCCATCGGGATATTGAACACCTGTGGGAGTTTTACCAGCACTACAAGAGACGTCATAGAGTGGATGACA TCCAAAGAGAGGAACAAAAGTTCCGGGAATCTGGAAATTTTTCTACTGTTAATCTGGGAGAATTTGAGCTAAGATCTCTAGAGATGAAAAAGGTATTTGC TACCTTGAGGGCCTTAGTAGAGGTCATGGAAGCACTCAGTAAAGATGCAGATCCTCATGGGGCTGGCAGACATATCATGGAGGAGCTACAAAGAATTAAG ACGGTTGGGGAGCTCACATCGTATAATATTGTCCCATTGGATGCACCTTCATCAAGTAATGCCACTGGAGTTTTCCCTGAAGGTTGCTCCACATGA
AA sequence Show only first row Show all	>Potri.015G089500.3 pacid=42775156 polypeptide=Potri.015G089500.3.p locus=Potri.015G089500 ID=Potri.015G089500.3.v4.1 annot-version=v4.1 MSRVTNNWERLVGATLKRELGQGHERTSSGIAGAVPPSLARTTIIDAILQAADEIQDEDPNVARILCEQAYSMAQNLDPSSDGRGVLQFKTGLMSAITQK LARRDGARIDRHRDIEHLWEFYQHYKRRHRVDDIQREEQKFRESGNFSTVNLGEFELRSLEMKKVFATLRALVEVMEALSKDADPHGAGRHIMEELQRIK TVGELTSYNIVPLDAPSSSNATGVFPEGCST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Potri.015G089500 [exp]	0	1	Pt-ATGSL08.1
AT5G15080			Protein kinase superfamily pro...		Potri.008G194700 [exp]	27.71	0.7229
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	53.66	0.7136
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	66.99	0.7066
AT3G12590			unknown protein		Potri.008G052700 [exp]	116.92	0.7031
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.018G107500 [exp]	156.72	0.6902
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044732 [exp]	269.84	0.6661

Compare expression of checked genes

Potri.015G089500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.