Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18030 348 / 2e-123 ATHAL3A HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) AT1G48605 339 / 3e-120 ATHAL3B HALOTOLERANCE DETERMINANT 3B, HALOTOLERANCE DETERMINANT 3, Flavoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014795 [exp] 357 / 4e-127 AT3G18030 338 / 6e-120 HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) Lus10034286 [exp] 357 / 6e-127 AT3G18030 339 / 4e-120 HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) Lus10017923 [exp] 208 / 7e-64 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02441 [poplar] [flax] Flavoprotein Flavoprotein
Representative CDS sequence Show only first row Show all	>Potri.015G089600.1 pacid=42775791 polypeptide=Potri.015G089600.1.p locus=Potri.015G089600 ID=Potri.015G089600.1.v4.1 annot-version=v4.1 ATGGAATACTCGGAACCTGTGACAGCAGAGATGGAGACAGCACAGGTTAATGCTGTCGCCGCGGCCGCCGGTCCTAGGAAACCTAGGATTCTACTAGCGG CAAGTGGGAGTGTAGCTGCTATTAAATTTGGGAATCTTTGTCATTGTTTTTCTGAATGGGCTGAAGTGAAAGCGGTTGCTACTAGGGCTTCTTTGCATTT CATTGATAGAGCTGCATTGCCTAAGGATGTTGTGCTCTACACTGACGAGGATGAATGGTCGAGTTGGAATAAGATAGGAGATACTGTGCTTCATATTGAG TTAAGACGGTGGGCTGATATCATGGTTATTGCTCCTTTATCTGCTAATACGCTTGGCAAGATTGCTGGGGGGTTGTGTGACAATCTGCTGACCTGCATTG TCCGAGCATGGGATTACAGCAAGCCACTTTTTGTTGCGCCGGCTATGAACACTTTCATGTGGAGCAACCCTTTCACAGAACGGCATCTCATGTCAATTGA TGAGCTTGGAATTTCCTTGATCCCACCTGTTTCAAAGAGGCTGGCATGTGGAGATTATGGGAATGGTGCAATGGCTGAACCTTCTCTAATCTACTCAACT GTAAGACTATTCTTGGAGTCACGGAGTCAAGCCGGTGATAGAAGAGTTGGTTAA
AA sequence Show only first row Show all	>Potri.015G089600.1 pacid=42775791 polypeptide=Potri.015G089600.1.p locus=Potri.015G089600 ID=Potri.015G089600.1.v4.1 annot-version=v4.1 MEYSEPVTAEMETAQVNAVAAAAGPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVKAVATRASLHFIDRAALPKDVVLYTDEDEWSSWNKIGDTVLHIE LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWSNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYST VRLFLESRSQAGDRRVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Potri.015G089600 [exp]	0	1
					Potri.011G077440 [exp]	2.44	0.8253
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053300 [exp]	3.16	0.8294
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	4.47	0.8601	EXPA3.1,PtEXPA16
AT4G15140			unknown protein		Potri.006G008000 [exp]	4.89	0.8654
AT3G18050			unknown protein		Potri.015G040900 [exp]	6.00	0.8410
AT1G03330			Small nuclear ribonucleoprotei...		Potri.003G014900 [exp]	6.24	0.8002
AT1G78172			unknown protein		Potri.002G096200 [exp]	6.92	0.8384
AT4G34760			SAUR-like auxin-responsive pro...		Potri.004G164400 [exp]	8.00	0.8122	SAUR29
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Potri.015G093500 [exp]	10.09	0.7884
AT1G04630		MEE4	maternal effect embryo arrest ...		Potri.001G054500 [exp]	12.00	0.7870

Compare expression of checked genes

Potri.015G089600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.