Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50310 825 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G18590 89 / 6e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G74150 86 / 3e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G04670 85 / 8e-17 Met-10+ like family protein / kelch repeat-containing protein (.1) AT3G05420 83 / 3e-16 ACBP4 acyl-CoA binding protein 4 (.1.2) AT1G18610 82 / 6e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G27630 79 / 5e-15 ACBP5 acyl-CoA binding protein 5 (.1) AT3G07720 74 / 5e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G16400 74 / 1e-13 ATNSP1, ATMLP-470 MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470, nitrile specifier protein 1 (.1.2) AT3G16410 74 / 2e-13 NSP4 nitrile specifier protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G214900 [exp] 90 / 2e-18 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G008200 [exp] 89 / 2e-18 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G022000 [exp] 88 / 1e-17 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G013000 [exp] 83 / 2e-16 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 82 / 5e-16 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 78 / 1e-14 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G026900 [exp] 74 / 2e-13 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G024700 [exp] 72 / 7e-13 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.013G018800 [exp] 71 / 2e-12 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040895 [exp] 852 / 0 AT5G50310 904 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10043420 [exp] 84 / 2e-16 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10034163 [exp] 82 / 6e-16 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10017860 [exp] 78 / 7e-15 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031497 [exp] 78 / 1e-14 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10002756 [exp] 78 / 1e-14 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10015176 [exp] 78 / 1e-14 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 77 / 3e-14 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031420 [exp] 77 / 3e-14 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010913 [exp] 74 / 2e-13 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] PF13422 [poplar] [flax] DUF4110 Domain of unknown function (DUF4110)
Representative CDS sequence Show only first row Show all	>Potri.015G090100.1 pacid=42776608 polypeptide=Potri.015G090100.1.p locus=Potri.015G090100 ID=Potri.015G090100.1.v4.1 annot-version=v4.1 ATGGGAAAGAAAACGAAGAAAGTAGGCAAAGGTAAAGAGAAAACAGAGAAAAAAACAGCAAAAGCCGAAGAAAAAAAAGCTCGCAGAGAAACCAAAAAAC TCTCTCCTGAAGATGACATCGACGCCATTTTGTTGAGTATACAAAAAGAAGAAGCTAAGAAGAAGGACGTCCATGTGGAGGAGAATGTAGCAGCACCGTC TCCTCGATCCAATTGCACGTTAAACATTAATCCCTTGAAAGACACGGAATTGATACTTTATGGAGGTGAATTCTACAATGGTAGCAAGACATTTGTGTAT GGTGATCTTTATCGTTATGACGTGGAGAAGCAAGAATGGAAGTTGGTATCGAGCCCTAATAGTCCGCCTCCACGGAGTGCTCACCAGGCGGTTGCTTGGA AGAATTATCTTTACATATTTGGTGGTGAATTCACTTCCCCGAACCAGGAGCGCTTTCATCACTACAAGGACTTCTGGATGTTGGACTTGAAAACAAATCA ATGGGAACAGCTAAATTTCAAAGGCTCTCCAAGTCCACGTTCAGGTCATCGAATGGTTTTACACAAGCACAAAATTATTCTTTTTGGTGGCTTCTATGAC ACTCTCAGAGAAGTGAGGTATTATAATGACCTACACATCTTTGACTTGGATCAATTCAAGTGGCAAGAAATAAAACCAAAGCTTGGAGCCATGTGGCCAA GTGCACGGAGTGGTTTCCAGTTTTTTGTTTATCAAGATGAGGTTTTTTTATATGGTGGTTATTCCAAAGAAGTTTCATCTGATAAGAGCATCTCAGAGAA AGGAATTGTTCATTCAGATATGTGGTCCCTTGATCCTAGGACCTGGGAATGGAACAAGGTAAAGAAAAGTGGGATGCCTCCTGGTCCTCGTGCTGGATTT TCCATGTGTGTTCATAAAAAGCGTGCAATGTTATTCGGAGGTGTAGTGGATATGGAAATGGAAGGTGATGTAATGATGAGCTTATTCTTGAATGAACTTT ATGGCTTCCAATTAGACAACCGTCGCTGGTATCCATTGGAGCTGCGGAAGGAGAAGTCTACAAAAGATAGGTCAAAAAAGAGTTCCGAACAAAGGACTAC TAGTTTTGATAATAAGAAATATTCAAATGATATGGGGGAGGAGCCTACCCCAAATGATCCAGATGAGAACCTAGAGTACCATGAAGAAGCAGAAAATATA GAAAGCAGCATTGATGAAATATCTCACAATTTGACCAGAAAAATTACCGTAATTGATGGCAGTTTGTCGGCTGCCAAATTAGATGGGAAACCTGGAACAT CTGAAGCTAAACAAATTCTGCAAAATTCTGTTTTATCAGAGACAGTGAAGCCATGTGGACGTATAAATTCTTGTATGGTTGTGGGGAGAGATATGTTGTA CATATATGGTGGCATGATGGAGATTAGAGACCAGGAAATTACACTCGATGATTTGTATTCTCTCAATCTCAGCAAACTTGATGAGTGGAAGTGCATTATA CCGGCATCTGAATCAGAATGGGTTGAAGCATCAGAGGATGAAGATGATGACGAAGATGAAGATGCAAGTGATGGCGAGGGTGGGAGCGATAGCAATGATG AGACTGATGATGGCGAGGATGATGACGATGATAATGATGTAGAGGCTAGAAATAATGGTTCTGGATCACTTCAAGTGGGAGATGCTGTTGCTATAATAAA AGGTGAAAAGAAAAATCTACGGAGGAAGGAGAAACGGGCCAGGATAGAGCAGATCAGAGCCAATCTTGGTCTTTCAGATGCACAAAGAACACCAACGCCT GGAGAATCTTTGAAGGATTTCTATAAACGTACAAACCTTTACTGGCAAATGGCAGCACATGAACATACCCAACACACTGGAAAGGAGCTTCGCAAGGATG GTTTTGATCTTGCTGAAGCACGATACAAGGAACTTAAACCAATTCTTGATGAGTTGGCTATATTAGAGGCGGAGCAGAAAGCTGAAGAAGCAGAAGAGGC TGAAACTAGTTCAAGAAAGAGAGGCAAGAAGAAAAATAAATAA
AA sequence Show only first row Show all	>Potri.015G090100.1 pacid=42776608 polypeptide=Potri.015G090100.1.p locus=Potri.015G090100 ID=Potri.015G090100.1.v4.1 annot-version=v4.1 MGKKTKKVGKGKEKTEKKTAKAEEKKARRETKKLSPEDDIDAILLSIQKEEAKKKDVHVEENVAAPSPRSNCTLNINPLKDTELILYGGEFYNGSKTFVY GDLYRYDVEKQEWKLVSSPNSPPPRSAHQAVAWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNFKGSPSPRSGHRMVLHKHKIILFGGFYD TLREVRYYNDLHIFDLDQFKWQEIKPKLGAMWPSARSGFQFFVYQDEVFLYGGYSKEVSSDKSISEKGIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGF SMCVHKKRAMLFGGVVDMEMEGDVMMSLFLNELYGFQLDNRRWYPLELRKEKSTKDRSKKSSEQRTTSFDNKKYSNDMGEEPTPNDPDENLEYHEEAENI ESSIDEISHNLTRKITVIDGSLSAAKLDGKPGTSEAKQILQNSVLSETVKPCGRINSCMVVGRDMLYIYGGMMEIRDQEITLDDLYSLNLSKLDEWKCII PASESEWVEASEDEDDDEDEDASDGEGGSDSNDETDDGEDDDDDNDVEARNNGSGSLQVGDAVAIIKGEKKNLRRKEKRARIEQIRANLGLSDAQRTPTP GESLKDFYKRTNLYWQMAAHEHTQHTGKELRKDGFDLAEARYKELKPILDELAILEAEQKAEEAEEAETSSRKRGKKKNK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50310			Galactose oxidase/kelch repeat...		Potri.015G090100 [exp]	0	1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G070200 [exp]	1.00	0.8425
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.005G201400 [exp]	3.87	0.8150
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.016G041200 [exp]	4.89	0.8345	Pt-NAP57.1
AT5G66540			unknown protein		Potri.015G078500 [exp]	5.47	0.7819
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.012G069100 [exp]	6.63	0.7476
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.006G044100 [exp]	6.92	0.8035	Pt-NAP57.2
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.014G108400 [exp]	7.93	0.7786
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.012G129200 [exp]	8.06	0.7940
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.004G084800 [exp]	8.24	0.7148	Pt-MAP2.2
AT3G18600			P-loop containing nucleoside t...		Potri.009G045300 [exp]	11.31	0.7765

Compare expression of checked genes

Potri.015G090100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.