Plant FIBer expression Database

ELF5.2 (Potri.015G090200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ELF5.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62640 160 / 5e-43 AtELF5, ELF5 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G093000
[exp]
218 / 3e-64 AT5G62640 171 / 1e-46 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042169
[exp]
197 / 1e-56 AT5G62640 244 / 3e-74 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Lus10004261
[exp]
195 / 1e-55 AT5G62640 242 / 2e-73 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09429 Wbp11 WW domain binding protein 11
PF12622 NpwBP mRNA biogenesis factor
Representative CDS sequence
>Potri.015G090200.1 pacid=42775481 polypeptide=Potri.015G090200.1.p locus=Potri.015G090200 ID=Potri.015G090200.1.v4.1 annot-version=v4.1
ATGAAGACGACTAAAGGAGGCAAAGTTATGAACCCTACGGATGCTTACCGTAAGGAGCTTCGTAAGAAGGAATTAAAACGGAACAAGAAGGAAAGAAAGA
AGGTGAGAGAGGTGGGGATTTTGAAGAAGGATCCTGATGTGATCAAGGAGCAAATAGAGAAGTTGGATTTGATGAAGGCTGATGGTGCTTTAGACAAAGC
AAGAAAACACAAAAAGAGACAACTTGAGGATACTCTTAGCCTTGTTATAAAGAAGAGAAGGGAATATGAAGATAAAATGAAGGAGAAGGGTGAAACCCCT
GTGATGTTCAGTCATTTGGGCCCTCTTCGAAGAAGGACATCTGCAGAAGAAGAAGAAAGAGCCAGGCATCCAAAGCCTGAAGACTCTGTGTACTATCACC
CTACTATGAATCCTACTGGAGCCCCACCACCTGGAAAGCCTCCCATGTATAAATCATCCATAGGACCCCGGATTCCTTTATCTGGTGCTTCATCCTCCAC
AGCTGAATCAGAGGATGCTGCTTTAGCGGTACCTCCTCCCTTGCCAGAGAGCGGGGAATTAGGCCCTGGTGATGGCTCTGCTATACCTGCTTTGTTGCCC
CTACCTCCTCCACCTCCATTGCCACCAATGCCTGCAGCTCCAAGTTTGGGCATGTCATTACCCCCACCCCCTTTACCTCCACCTCCTCCAGGTCCTCCTC
CAAAGGATCAAGTTTCAAGTCACATCTCTCTTCCCCCACCTCCACCCCTCCAACAGTCTGCTCAACCGCCACCACCACCTGGCACAAATGAAAGTGGGAG
TGAGACCAATATATCTGCATTGTTAGATGAATCATCCTCCAAGGATAATGCTCAGGTACCTGCTTCACTCCCTCCACCTCCTCCAATTGCAATGCAGCTG
AAGTCTGCTAATAGTCTTTCTGAAGGCACTTCATCCGAAGCTGATGCCAATACTGCAGCAACTATGGATAACCCTAAAATGGTTCCTCCCCCACCTCCTC
CTAGGCAACAACCTCTAGCACCCGGACAAGCCTTGACTCCAACTTTACAGCCTGAAGTTTTACCCCCAGGCATATCACGTTTCCCCCCACCTCCACCTCC
GCCAAATGTGCGGCCACCATTATCTTCTCCTGGAATTCCTGGACAAGTGGCTCCTCCAGGGGTGATGCTCCCATTAATTCCCAGACCTCCATATGGTCCT
CCACCTGGACCTCCTCCAATGATGAGACCACCTCTACCACCTGGTCCTCCTCCATTCTTTCAAGAAGATGCTGCAAATAGGCCACATGTTCCTCAGAAAC
CATCTTATGTAAAATCTGCTGCATCCACTGTTGTTAAACGGCCGCTAGCACAGCACACTCCAGAACTTACAGCTATGGTTCCTGCCTCAGTTCGAGTGAG
GAGAGAGGCTGCTATCCCTAAACCAAAACCAAAGGCTGTAACCTCGACAACAGCAGTAGCCACCAGGCCAGCAGCTCCAACCACTGTGAAGCCAGATTCA
ACTAACTCATCATCAGCTCCAAGGTCTAAGAGCATTGATGACTCATATACGGCCTTTTTAGAGGACATGAAAGCACTAGGTGCACTTGATAGTTAA
AA sequence
>Potri.015G090200.1 pacid=42775481 polypeptide=Potri.015G090200.1.p locus=Potri.015G090200 ID=Potri.015G090200.1.v4.1 annot-version=v4.1
MKTTKGGKVMNPTDAYRKELRKKELKRNKKERKKVREVGILKKDPDVIKEQIEKLDLMKADGALDKARKHKKRQLEDTLSLVIKKRREYEDKMKEKGETP
VMFSHLGPLRRRTSAEEEERARHPKPEDSVYYHPTMNPTGAPPPGKPPMYKSSIGPRIPLSGASSSTAESEDAALAVPPPLPESGELGPGDGSAIPALLP
LPPPPPLPPMPAAPSLGMSLPPPPLPPPPPGPPPKDQVSSHISLPPPPPLQQSAQPPPPPGTNESGSETNISALLDESSSKDNAQVPASLPPPPPIAMQL
KSANSLSEGTSSEADANTAATMDNPKMVPPPPPPRQQPLAPGQALTPTLQPEVLPPGISRFPPPPPPPNVRPPLSSPGIPGQVAPPGVMLPLIPRPPYGP
PPGPPPMMRPPLPPGPPPFFQEDAANRPHVPQKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAIPKPKPKAVTSTTAVATRPAAPTTVKPDS
TNSSSAPRSKSIDDSYTAFLEDMKALGALDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.015G090200
[exp]
0 1 ELF5.2
AT2G31240 Tetratricopeptide repeat (TPR)... Potri.005G222900
[exp]
1.00 0.9545
Potri.007G074433
[exp]
1.41 0.9368
AT4G31200 SWAP (Suppressor-of-White-APri... Potri.006G279800
[exp]
1.73 0.9356
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Potri.009G041400
[exp]
2.82 0.9280
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.012G093000
[exp]
4.00 0.9094
AT5G06160 ATO ATROPOS, splicing factor-relat... Potri.012G012800
[exp]
4.00 0.9037
AT3G56860 UBA2A UBP1-associated protein 2A (.1... Potri.001G220600
[exp]
4.47 0.9166
AT3G02710 ARM repeat superfamily protein... Potri.004G076600
[exp]
6.00 0.9020
AT3G13060 ECT5 evolutionarily conserved C-ter... Potri.007G002800
[exp]
6.63 0.8847
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.014G128300
[exp]
7.00 0.9128

Potri.015G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.