Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HAG905
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50320 1066 / 0 EAST1, AtELP3, HAC8, ELO3 ,HAG3 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1) AT5G63290 42 / 0.001 Radical SAM superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G092800 [exp] 1117 / 0 AT5G50320 1031 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014792 [exp] 1083 / 0 AT5G50320 1088 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1) Lus10001102 [exp] 1073 / 0 AT5G50320 1080 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF00583 [poplar] [flax] Acetyltransf_1 Acetyltransferase (GNAT) family CL0036 [poplar] [flax] TIM_barrel PF04055 [poplar] [flax] Radical_SAM Radical SAM superfamily CL0036 [poplar] [flax] PF16199 [poplar] [flax] Radical_SAM_C Radical_SAM C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G090500.1 pacid=42775897 polypeptide=Potri.015G090500.1.p locus=Potri.015G090500 ID=Potri.015G090500.1.v4.1 annot-version=v4.1 ATGGCAACTGCAGTAATTACCGAGACCAAAAAACTCCCGCGACCTGGTCGCGGCGGTTACCAACCTCACGGACTAACCGAAGAAGAAGCTAGAGTCCGAG CCATAGCCGAAATCGTCAATTCCATGGTAGACCTTTCACGAAAAAACCAAACCGTCGATCTTAACGCACTAAAATCTGCCGCATGTCGCAAATACGGCCT CGCACGTGCTCCAAAACTCGTCGAGATGATCGCAGCGTTGCCGGATTCTGACCGCGAGTCACTGCTACCGAAACTCCGAGCCAAACCGGTACGCACGGCA TCAGGAATTGCAGTTGTTGCTGTCATGTCGAAGCCTCACCGGTGCCCGCATATCGCGACGACGGGGAATATTTGTGTGTATTGTCCTGGTGGACCAGACT CAGATTTTGAGTACAGTACGCAGTCGTATACTGGTTATGAACCTACCAGTATGCGTGCGATTCGAGCTAGATATAACCCATATGTCCAGGCTAGAAGCAG GATTGATCAGCTTAAGAGACTGGGTCATAGCGTGGATAAGGTTGAGTTCATATTAATGGGTGGTACTTTCATGTCATTGCCAGCAGATTACCGTGATTAC TTTATAAGGAACCTTCACGATGCTTTATCAGGGCACACTTCTGCCAATGTTGAAGAGGCAGTTGCCTACTCTGAGCATGGTGCAACCAAGTGCATTGGCA TGACGATTGAAACGAGGCCAGATTATTGTCTTGGTCCTCATCTACGCCAAATGCTTTCATATGGGTGCACACGATTGGAGATTGGAGTTCAAAGCACATA TGAGGATGTTGCTCGAGACACTAATAGAGGACACACGGTAGCTGCTGTGGCTGATTGTTTTTGCTTGGCAAAGGATGCTGGTTTTAAGGTTGTTGCTCAT ATGATGCCTGATCTTCCAAATGTAGGGGTTGAGAGGGACTTGGAAAGTTTTCGAGAGTTCTTTGAGAGTCCTTGTTTTAGAGCTGACGGGCTCAAAATTT ATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTATGGAAAACTGGCAGGTACAGAAATTATCCACCTGAGCAACTTGTAGATATTGTAGCAAG GATCCTAGCCATGGTACCCCCTTGGACGCGAGTTTATAGAGTTCAACGGGATATTCCTATGCCTTTGGTTACATCTGGAGTTGAGAAAGGAAATCTTAGG GAGTTAGCCTTAGCTCGGATGGATGACTTGGGCCTGAAATGCCGTGATGTCCGTACACGTGAGGCTGGAATCCAGGATATTCATCACAAGATTAAGCCAG AAGAAGTTCAACTTGTTCGCCGTGATTATACAGCCAATGAAGGCTGGGAAACATTTCTTTCCTACGAGGATACACGCCAGGATATTCTTGTTGGGTTACT GCGCTTACGAAAATGTGGCCGCAACGTTACTTGCCCTGAGCTTACGGGGAAGTGCTCTATTGTTCGTGAACTTCATGTTTATGGAACTGCAGTTCCTGTT CATGGGCGTGATGCAGAGAAGCTGCAACACCAGGGTTATGGTACACTTTTGATGGAAGAGGCAGAACAGATTGCTCGCAAGGAGCATAGATCGACCAAAA TAGCTGTTATTTCAGGAGTAGGAACCCGCCATTACTATAGAAAATTGGGCTACGAGCTTGAAGGGCCATACATGGTGAAATCCCTTTCTTAA
AA sequence Show only first row Show all	>Potri.015G090500.1 pacid=42775897 polypeptide=Potri.015G090500.1.p locus=Potri.015G090500 ID=Potri.015G090500.1.v4.1 annot-version=v4.1 MATAVITETKKLPRPGRGGYQPHGLTEEEARVRAIAEIVNSMVDLSRKNQTVDLNALKSAACRKYGLARAPKLVEMIAALPDSDRESLLPKLRAKPVRTA SGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDY FIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAH MMPDLPNVGVERDLESFREFFESPCFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLR ELALARMDDLGLKCRDVRTREAGIQDIHHKIKPEEVQLVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELTGKCSIVRELHVYGTAVPV HGRDAEKLQHQGYGTLLMEEAEQIARKEHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKSLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Potri.015G090500 [exp]	0	1	HAG905
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G141200 [exp]	4.12	0.8423
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G133000 [exp]	7.14	0.8307
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.009G090200 [exp]	7.61	0.8331
AT3G04020			unknown protein		Potri.010G205900 [exp]	7.93	0.8208
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.005G148500 [exp]	10.24	0.8108
AT1G50000			methyltransferases (.1.2)		Potri.001G290100 [exp]	10.58	0.8127
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	11.83	0.8294
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	12.68	0.8254
AT1G18030			Protein phosphatase 2C family ...		Potri.015G043000 [exp]	13.11	0.7500
AT5G45590			Ribosomal protein L35 (.1)		Potri.003G099900 [exp]	13.41	0.8165

Compare expression of checked genes

Potri.015G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.