Plant FIBer expression Database

Potri.015G090600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25100 919 / 0 CDC45 cell division cycle 45 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022775
[exp]
977 / 0 AT3G25100 894 / 0.0 cell division cycle 45 (.1)
Lus10011840
[exp]
974 / 0 AT3G25100 894 / 0.0 cell division cycle 45 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02724 CDC45 CDC45-like protein
Representative CDS sequence
>Potri.015G090600.1 pacid=42774899 polypeptide=Potri.015G090600.1.p locus=Potri.015G090600 ID=Potri.015G090600.1.v4.1 annot-version=v4.1
ATGGTTAGAGAGCAAAGGGTAGAGTCCTTTTACACCCGCCTCCGCGAATCTGTTTCAACTTCGTCCCTCTCTCCTCTACTTATATTTCCCTCAACTTCTG
ATGCAGACTCCCTCTGTGCTCTTAAAATTATTTTCCACATTCTTGAATCTGATTCTGTCCGTTACGCTTGCTATCCTGTTTCTTCCTTCCAAGAAATCCA
CAAATATGCTGGTTTGACTTCACTTTCTAGTGAACCCATTTCAATCCTGTTAGTAAATTGGGGTTGTCAGCGTGATTTGAGGTTGTTGCTCAATTTAGGC
CCTGCTGCACGTGTTTTCGTGGTTGATAGTCACCGCCCCATCCATTTGCATAACTTGAATGACCAGAATGAGAGTGTGGTTGTTCTTTACACGGGCGATG
ACGAGCAACAAGCTGATTTGGCTTATGATTTTAAAGTTTCGGAGTTGGCTAATGCGAGTGAGTTGAATAGTGATGACGAGGGGGAAGAGAACTCTGACAG
TGAAGATGAGGAAGATAGTGAAAGTGAGGGAGATGAGGATGATGGGTCATCAAGGAAGCGGAGGAGGGTTTCTAATGAGGATGAAGCTGATCCAGTTCAG
CTTTTTAGGAAATTGAAGAGGGAGTATTATCGCAGGGGTACTTTTCATGGAAAGCCCTCAGGGTGTTTGATGTATGATTTATCGCATTTGCTGAGGAAGA
ACACGAATGAGCTGCTTTGGTTGGCTTGTGTTTCTCTGACTGATCAATTTGTTCATGAGAGGTTGACGGATGAGAGGTACCTAGCTGGGGTCATGGAGCT
GGAGCAACATATTAACAGTTCAGGGAATTTGGAGGCAGTTACTGTGGTGACCCTCAAAGATGGAACAAAGATTCGAGCACCTGAGTCTTCAAGGATTGCC
TATGAAGATGAACCTAGACTTATGTTGTTGAGGGAGTGGAATTTGTTCGATTCAATGCTGTGTTCTTCATATATTGCTACAAAATTGAAGACATGGAATG
ACAATGGAATGAAGAAGCTTAAGCTTCTTCTTGCTAGAATGGGATTTGCCCTAGTGGATTGCCAACAAAAGTTTCAGTACATGAATCTTGAAGTGAAGAG
AAAGATGAAAGACGAGTTTGAACGATTTTTACCCGAATATGGGCTTTCTGATTTTTACTACAGGAGCTTTCTGAGGCTACATGGGTACAGCTCGAGGGTG
TCTGCAGCAGATGTTGTGTATGGTGTCACTGCTTTGCTCGAGTCATTTGTGAGTTCTGATGGGTCTTGTGCTTCTAAGCAGTTTGGGGTAGCTTATGATG
CTCTGTCCTTGAACAATCTTGACAAGTTGAAAGCTGGAATGCAACAAGCGATCAAGGTCCAGAGGGCAATTCTTAGACAAGGAAGTGCAGCAATAACGAA
GAGTGGTTCTATCAGAAGTGGAAGAAAGTTCAGGTGGGTGAAGCTTGAGGATTCAGTGGATACAAAACTGTTGGGATACCCCCAGGCTTTGACTAAATTC
TGCTATTTTCTGATGGATGCTTTGAGAGAGAAAGGTGCCAGGGCAAAGCCTTTGATTTGTGCCTGCTTGTCGCAAGAGCCAAACAAGATGTTGATTGTTG
GAGTTTGTGGGAAGCCTCGTCTTGGGGCAGTTCAAGGAAATGCATTTGGGATTGCATTCAGAAATGCAGCTGAAGAGATTGGAGCTGAGTTCTTTCATGA
GTTGTTTGAATCTTCATGGATTGTTTTAGACAAAGGTGTAGTTAATAACTTTATGATCAGATTAACTGAGAAACTGTGA
AA sequence
>Potri.015G090600.1 pacid=42774899 polypeptide=Potri.015G090600.1.p locus=Potri.015G090600 ID=Potri.015G090600.1.v4.1 annot-version=v4.1
MVREQRVESFYTRLRESVSTSSLSPLLIFPSTSDADSLCALKIIFHILESDSVRYACYPVSSFQEIHKYAGLTSLSSEPISILLVNWGCQRDLRLLLNLG
PAARVFVVDSHRPIHLHNLNDQNESVVVLYTGDDEQQADLAYDFKVSELANASELNSDDEGEENSDSEDEEDSESEGDEDDGSSRKRRRVSNEDEADPVQ
LFRKLKREYYRRGTFHGKPSGCLMYDLSHLLRKNTNELLWLACVSLTDQFVHERLTDERYLAGVMELEQHINSSGNLEAVTVVTLKDGTKIRAPESSRIA
YEDEPRLMLLREWNLFDSMLCSSYIATKLKTWNDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLSDFYYRSFLRLHGYSSRV
SAADVVYGVTALLESFVSSDGSCASKQFGVAYDALSLNNLDKLKAGMQQAIKVQRAILRQGSAAITKSGSIRSGRKFRWVKLEDSVDTKLLGYPQALTKF
CYFLMDALREKGARAKPLICACLSQEPNKMLIVGVCGKPRLGAVQGNAFGIAFRNAAEEIGAEFFHELFESSWIVLDKGVVNNFMIRLTEKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G25100 CDC45 cell division cycle 45 (.1) Potri.015G090600
[exp]
0 1
AT5G65360 Histone superfamily protein (.... Potri.001G016900
[exp]
2.44 0.8887
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Potri.006G275700
[exp]
3.46 0.8649
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Potri.018G112800
[exp]
4.47 0.8442
AT5G19330 ARIA ARM repeat protein interacting... Potri.002G052700
[exp]
8.12 0.8032
AT1G57820 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTH... Potri.003G162400
[exp]
10.09 0.8011
AT2G26180 IQD6 IQ-domain 6 (.1) Potri.006G226600
[exp]
10.77 0.8720
AT1G14900 HMGA high mobility group A (.1) Potri.010G109600
[exp]
11.40 0.8232
AT2G30350 Excinuclease ABC, C subunit, N... Potri.013G155900
[exp]
17.49 0.7171
AT1G24360 NAD(P)-binding Rossmann-fold s... Potri.010G056100
[exp]
20.59 0.6860
AT5G65360 Histone superfamily protein (.... Potri.014G096900
[exp]
23.10 0.8413 HTR906

Potri.015G090600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.