Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48470 1071 / 0 EMB2423 embryo defective 2423 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001100 [exp] 714 / 0 AT3G48470 735 / 0.0 embryo defective 2423 (.1) Lus10001101 [exp] 217 / 3e-64 AT3G48470 209 / 5e-62 embryo defective 2423 (.1) Lus10014791 [exp] 206 / 1e-60 AT3G48470 176 / 4e-51 embryo defective 2423 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10193 [poplar] [flax] Telomere_reg-2 Telomere length regulation protein
Representative CDS sequence Show only first row Show all	>Potri.015G090700.1 pacid=42776327 polypeptide=Potri.015G090700.1.p locus=Potri.015G090700 ID=Potri.015G090700.1.v4.1 annot-version=v4.1 ATGGAAACGGAGGGAGATGCAAAGAGAAGGAGAGAAGTGGAGAGCGGGATTCTCGAGAAAGTTGGACAAATTATTTCAGAAATAAAATCTGCCAAACACG TAGACCAACTCATTTGCTCTCTCCACTCTCTCGCTCTCCTTCTCTTCCCTCTAGATTCATCCCTCATTTTACCTACTATTGATGAAAGTTTCAGAGAACA GATTCGTAGTGCTAAAATTCCTTCTGCAAACGAGAGGAGCGAGTGGTGGCAAACATTTTACCGAGGCAGAGGAGCTGCGTTTCCGACATTTGCTAGGGTT TTATTACTTGATGTTGTGTCCGACTGGTTAGCTTGTTTTCCGGTTTCGGCGAAAAAGCATGTTTATGATGTTTTCTTTGTCAATGGATTCGCCACGGAGG TTGTTCAGACTTTAGTTCCTTACCTACAGTACAAGGGAAATGGAAGTGTTGTTGATGTTAACGCTGTTCAATCCAATACTGAAAGGTTACTTGTATTGTG CTTGCTTGAAAATGATGGCGTGCTACAAATTGCTAGAGAGTTCGGCAGTTCTCAACTTTATGAGGATTTTACAATTGTACAGCTCCAACCATTGGCGTCT AGGGTGGCTCAAATTGTTGCATCTATTCCTGACAAAGCACAACCAAGAGCCCCAACTTCGCTTTCATCACATTCGTTCTTCAGGCAGATCACCTTTCAGC TTCTCCATGGAGCAGAAGAGAGGGATAAGAATCTATTTGATGAAGAAGCTACCCCACATAATTTTGAACTGGATGGTATACTGCTATTTATCGGGGAAAC ATTTTCTCGTATTTGTCGACGTGGGGCTTCAGATGTGCTACTAGGAGAATTAGTCTCTCATGTTCTTGGACACATCCGGAGCTTCTTATCATCAAGTATT GATTCAGTTATGGCAGATCTGCTTGAGTCAGATGCTGGATCTCAATTTTGGTTAAAGATAATGGGAGCAATTAAAGACCCCTATGCTGTTGAAAGAATCT CTGAGCAGCTCCTGCGTCAACTGTCAATTGAACATGCAACTGATACTGAAGCTTACTGGATTCTTTGGATATTGTTTAATCGGATCTTTAATAACCAGCC AGCTGTCAGGTCCCTGTTTTTGGACAAATTTTTACTATGGAAAATATTTCCCTTCTGTTGCCTACGATGGATCATTCAATTTGCTGTTTTTGAATGTCCA CCTGTCTCTAATTCACTTACTAAAGGGTGTGAAACCCGTGGTCTCGTAGACATGATGCAGCATCTGATGGCAGTATGGTCTCGACGGGAGTTCGTGCAAT CAACCCCAATGGAGCAGCAAGCTTATGTAACTGCTGCTATAGGTCTTTGCATGGAGAGGATTTCTAAAGAGGAGCTAGACAATTCCAAGGATTTGATGCA CTCAATTCTTCAAGGAGTTAGCTTTAGACTAGAGAGCCCTACTTATTTGATTCGGAAAATGGCTAGCAATATTGCTTTGGTGTTCTCTCAAGTAATCGAC CCCAAAAATCCTCTATACCTGGATGATAACTGCTTTGGAGAGACTTTTGACTGGGAGTTTGGATTTACTAAACCTGAGAAAGATACTCCGTCTAATCATA ATCACACAGAGAAGCACACTGATGAAACAAAAAGATTATCCACCTCACAGACAGAAAAGGACCTGGACTATTCTACAAATCAAGGAAGGGGCAAGAGTGA GAAAGCTGAAAGTAAGAAATTGTCTCAATTTAAGCTGCTTGATCCTGATGAGATTATCGATCTAGCTACTCTGAATTATGGATCAGCCTCTGATGAAGAT GAGGATGAAGCTGCAAGTGAGAATTCTGATTCCTCCAGTGATTCATCTTTGCAGCCATATGATTTGACAGATGATGACACAGACTTGAAGAGAAAACTTA CACAGTTGGTTGATGTAGTTGGAGCCCTACGTAAATCTGATGACGCTGATGGGGTAGAGCGGGCTCTTGATGTTGTTGAAAAGCTTGTGCGAGCATCACC TGATGAACTTACACACATAGCGGGGGATCTTGTTAGAACTCTTGTACAGGTTCGTTGCTCTGATTTGGCTGTAGAAGGTGAGGAAGAAACAGCTGAAGAA AAAAGGCAGAGAGCCTTGGTTGCCTTGCTTGTCTCTTGTCCTTTCCAGTCTCTCGAAAGTCTAAACAAACTTCTATATTCACCAAATGTAGACACAAGCC AACGCATAATGATTCTTGATGTAATGACTGAAGCAGCTCAGGAGCTTGCAGATTCTAAGACTATGAAACCAACACATCAATCAAGGGCCCTCATATCAAC TATATCAGAGAGCCAAGCTTGGTTCTTACCTAGCAGCATGGGGCCTCTTGGAGCTGGTTTTTGGAGAGAGGTCTCAGAAACAGGAACCCTGCTGAACTAT TCTAATCGGTATGAGAGAGAACTTCCACTCAAACCAGGTCAGATCAGAAAAGGGAAGATTCGTAGATGGAGTGTCAGATCAGCAAACGCACCAGAAAATC AGTCGGGATGGACCCAAAATAAATTCCCTGTTTATTCAGCAGCGTTTATGCTTCCAGCGATGGAGGGTTTTGATAAGAAAAGGCATGGTGTGGACTTACT TGGTAGAGATTTTATTGTCCTGGGGAAACTCATCTACATGCTTGGTGTTTGTATGAGATGTGTTTCCATGCATCCTGAAGCATCTGCATTGGCTCCTTCT CTTCTAGATATGTTAAGATCCAGAGAGATATGCCATCACAAAGAAGCTTATGTCAGAAGAGCTGTCCTTTTTGCTGCTTCAAGCGTGTTGGTGTCACTTA ATCCATCTTTTGTTGCATCAACCCTAACCGAAGGAAATCTTGAAGTTTCTAAGGGGCTTGAGTGGGTTCGCACTTGGGCCCTTGATGTAGCTGAGTCGGA TACAGACAGAGAGTGCTATACAATGGCCGTGTCATGCCTCCGAATTCATGCTGAGATGGCCCTGCAAGCTTCCAGGGTACTAGAGTCCGCAGAAAGTACA TTGAAGCCAAGGAGCATCGGTGTTTCTTCCAACCTATCCATGACGAAAATCAAAATCCCCTTCTCAAATGTAGAATACTAG
AA sequence Show only first row Show all	>Potri.015G090700.1 pacid=42776327 polypeptide=Potri.015G090700.1.p locus=Potri.015G090700 ID=Potri.015G090700.1.v4.1 annot-version=v4.1 METEGDAKRRREVESGILEKVGQIISEIKSAKHVDQLICSLHSLALLLFPLDSSLILPTIDESFREQIRSAKIPSANERSEWWQTFYRGRGAAFPTFARV LLLDVVSDWLACFPVSAKKHVYDVFFVNGFATEVVQTLVPYLQYKGNGSVVDVNAVQSNTERLLVLCLLENDGVLQIAREFGSSQLYEDFTIVQLQPLAS RVAQIVASIPDKAQPRAPTSLSSHSFFRQITFQLLHGAEERDKNLFDEEATPHNFELDGILLFIGETFSRICRRGASDVLLGELVSHVLGHIRSFLSSSI DSVMADLLESDAGSQFWLKIMGAIKDPYAVERISEQLLRQLSIEHATDTEAYWILWILFNRIFNNQPAVRSLFLDKFLLWKIFPFCCLRWIIQFAVFECP PVSNSLTKGCETRGLVDMMQHLMAVWSRREFVQSTPMEQQAYVTAAIGLCMERISKEELDNSKDLMHSILQGVSFRLESPTYLIRKMASNIALVFSQVID PKNPLYLDDNCFGETFDWEFGFTKPEKDTPSNHNHTEKHTDETKRLSTSQTEKDLDYSTNQGRGKSEKAESKKLSQFKLLDPDEIIDLATLNYGSASDED EDEAASENSDSSSDSSLQPYDLTDDDTDLKRKLTQLVDVVGALRKSDDADGVERALDVVEKLVRASPDELTHIAGDLVRTLVQVRCSDLAVEGEEETAEE KRQRALVALLVSCPFQSLESLNKLLYSPNVDTSQRIMILDVMTEAAQELADSKTMKPTHQSRALISTISESQAWFLPSSMGPLGAGFWREVSETGTLLNY SNRYERELPLKPGQIRKGKIRRWSVRSANAPENQSGWTQNKFPVYSAAFMLPAMEGFDKKRHGVDLLGRDFIVLGKLIYMLGVCMRCVSMHPEASALAPS LLDMLRSREICHHKEAYVRRAVLFAASSVLVSLNPSFVASTLTEGNLEVSKGLEWVRTWALDVAESDTDRECYTMAVSCLRIHAEMALQASRVLESAEST LKPRSIGVSSNLSMTKIKIPFSNVEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48470		EMB2423	embryo defective 2423 (.1)		Potri.015G090700 [exp]	0	1
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	2.00	0.8756
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.002G047200 [exp]	4.00	0.8351
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	5.83	0.8503
AT3G53690			RING/U-box superfamily protein...		Potri.018G064400 [exp]	6.48	0.8269
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	6.92	0.8390
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	8.48	0.8464
AT4G39420			unknown protein		Potri.007G078650 [exp]	9.16	0.8483
AT1G19485			Transducin/WD40 repeat-like su...		Potri.008G200900 [exp]	12.44	0.8112
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	13.22	0.8354
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.017G114100 [exp]	14.42	0.7941

Compare expression of checked genes

Potri.015G090700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.