Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) AT1G09730 79 / 3e-16 Cysteine proteinases superfamily protein (.1.2) AT4G33620 75 / 9e-15 Cysteine proteinases superfamily protein (.1) AT1G60220 71 / 1e-13 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT1G10570 61 / 4e-10 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT4G15880 49 / 2e-06 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G06910 43 / 0.0001 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1) AT4G00690 41 / 0.0007 ULP1B UB-like protease 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180300 [exp] 336 / 4e-116 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1) Potri.007G115400 [exp] 88 / 3e-19 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.017G044000 [exp] 85 / 3e-18 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.002G105700 [exp] 81 / 8e-17 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 80 / 2e-16 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.010G040600 [exp] 72 / 6e-14 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035097 [exp] 194 / 9e-62 AT3G48480 146 / 4e-43 Cysteine proteinases superfamily protein (.1) Lus10031938 [exp] 114 / 1e-31 AT3G48480 77 / 4e-18 Cysteine proteinases superfamily protein (.1) Lus10020445 [exp] 81 / 8e-17 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10000917 [exp] 78 / 7e-16 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10030867 [exp] 77 / 2e-15 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10030622 [exp] 73 / 4e-14 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02902 [poplar] [flax] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.015G090800.1 pacid=42775163 polypeptide=Potri.015G090800.1.p locus=Potri.015G090800 ID=Potri.015G090800.1.v4.1 annot-version=v4.1 ATGGCAAAGAGAAAACGTGAAGATGGAATAAGTTCTGCTGACACCAAATCTCCCATTTCAGAGACCTATGAGCGGATGGCGAAACATCGTTCATGTTGGA TACATATGCTAGCACACATGTATGCTGGTGGAAAGAAAATAACTAAACAAGAAGCTGAAGAATTAAGGAGCTTTAAGTTAACATCTCAGTGTTATTTGGG CACATTCCCTTGCAGTGCCCGATCAAAGAGGAGAATTAAGCGCAAGAAAGCAATTGTAAAAGAGATAAGAGAAAAGATAAAGCTAGATAGCGGAGCATTT GACTGCTACTTCGAACACATGTGGAGGAACTTCTCGGAAGATAAGAGGACTTTCATTACTTACTTTGATTGCTTATGGTTTAACCTGTACACTAAAGCAT CCTTTAAAGGAAAGGTCCTGACATGGATCAAGAAGAAGCAAATTTTTTCGAAGAAATATGTTCTTGTTCCCATCGTCCACTGGAGTCATTGGAGCCTCTT GATCTTCTGTCACCTTGGTGAGAGTCTCCAGTCAAAACTCAGGACACCGTGCATGCTGTTGCTGGATTCACTTGAAAAGGCAGGACCCAGGTGCCTCGAA CCAGATATAAGAAAGTTTGTATTGGATATTTATAAATCAGAAGGCAGGGCTGAAAATAAAGAGCTTATTTCTAAAATTCCATTGTTGGTGCCCAAGGTGC CACAACAAAGAGGTGGTGAAGAATGTGGCAATTATGTTCTGTACTATATAAATTTGTTTGTTCAGGGCGCTCCGGAGAATTTCTGCATGGATGACTACCC TTACTTTATGAAACAAAACTGGTTCAGTCCTGGATGCTTGGAGGCCTTTTTTGAGAAACTGGAACCAATTGAAATGTAA
AA sequence Show only first row Show all	>Potri.015G090800.1 pacid=42775163 polypeptide=Potri.015G090800.1.p locus=Potri.015G090800 ID=Potri.015G090800.1.v4.1 annot-version=v4.1 MAKRKREDGISSADTKSPISETYERMAKHRSCWIHMLAHMYAGGKKITKQEAEELRSFKLTSQCYLGTFPCSARSKRRIKRKKAIVKEIREKIKLDSGAF DCYFEHMWRNFSEDKRTFITYFDCLWFNLYTKASFKGKVLTWIKKKQIFSKKYVLVPIVHWSHWSLLIFCHLGESLQSKLRTPCMLLLDSLEKAGPRCLE PDIRKFVLDIYKSEGRAENKELISKIPLLVPKVPQQRGGEECGNYVLYYINLFVQGAPENFCMDDYPYFMKQNWFSPGCLEAFFEKLEPIEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48480			Cysteine proteinases superfami...		Potri.015G090800 [exp]	0	1
AT3G13440			S-adenosyl-L-methionine-depend...		Potri.001G073700 [exp]	3.87	0.9277
AT3G20800			Cell differentiation, Rcd1-lik...		Potri.011G086800 [exp]	3.87	0.9213
AT1G61150			LisH and RanBPM domains contai...		Potri.004G037600 [exp]	4.00	0.9107
AT1G79070			SNARE-associated protein-relat...		Potri.008G043200 [exp]	12.00	0.8761
AT4G18100			Ribosomal protein L32e (.1)		Potri.011G078200 [exp]	12.32	0.8628	RPL32.1
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.007G137600 [exp]	12.64	0.8600
AT5G39590			TLD-domain containing nucleola...		Potri.002G025032 [exp]	13.49	0.9115
AT5G14710			unknown protein		Potri.001G349500 [exp]	15.49	0.8917
AT5G56190			Transducin/WD40 repeat-like su...		Potri.016G000800 [exp]	17.23	0.8750
AT2G26530		AR781	Protein of unknown function (D...		Potri.001G274000 [exp]	18.65	0.9192

Compare expression of checked genes

Potri.015G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.