Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24820 672 / 0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) AT3G61140 82 / 8e-17 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G093500 [exp] 736 / 0 AT4G24820 680 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014789 [exp] 719 / 0 AT4G24820 691 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10027348 [exp] 712 / 0 AT4G24820 698 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10017932 [exp] 691 / 0 AT4G24820 660 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10014916 [exp] 650 / 0 AT4G24820 619 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain CL0020 [poplar] [flax] TPR PF10602 [poplar] [flax] RPN7 26S proteasome subunit RPN7
Representative CDS sequence Show only first row Show all	>Potri.015G090900.1 pacid=42776238 polypeptide=Potri.015G090900.1.p locus=Potri.015G090900 ID=Potri.015G090900.1.v4.1 annot-version=v4.1 ATGGAAAACCAAGGGGAAACTCAGCAACCGCATCTCGTCCTCTCTCACAAGCTATTCCTCTTGACTCACCCAGACGTCCAAGACATCGAGAAGGTCCGCT TGAAGGAGGAGGTTTTGACCACTATCAAATCCGACGATATGGTTCCGTTGTATGAAACCCTAGTGGCGGAGTCATTGCTGGAGAAAGATCAGAGTCTTTT GGATTCGATGCGAGCTAAGAATGAAGACGAGCTTAAGAAGCTCGATGAGAAGATTGCTGACGCTGAAGAAAATTTAGGTGAAAGTGAAGTTCGAGAAGCT CATTTAGCTAAATCCTTGTTCTACATTCGGATTGGTGACAAGGAGAAAGCATTGGAACAACTCAAGGTGACAGAAGGCAAAACAGTTGCCGTTGGGCAAA GGATGGACTTGGTGTTCTATACTTTACAGCTTGCATTTTTCTACATGGATTTTGATCTCATTTCCAAGAGCATTGACAAAGCAAAGAACTTGTTTGAAGA GGGAGGTGACTGGGAAAGGAAGAACCGCTTAAAGGTTTATGAAGGCTTGTATTGCATGTCCTCTCGAAATTTCAAGAAGGCAGCTGACTTATTTTTAGAT TCTATCTCAACCTTCACTACATATGAACTTTTCCCATATGATACCTTCATATTTTATACTGTCCTTACAAGCATCATATCACTGGATAGAGTTTCTTTGA AGCAAAAGGTGGTAGATGCTCCTGAGATCTTGACAGTGATTGGGAAAATCCCATATCTTTCAGAGTTTTTGAACTCATTGTATGATTGTCAATATAAATC ATTTTTCTCAGCATTTGCTGGCCTGACCGAGCAAATTAAACTGGACCGTTATTTGCATCCACACTTCCGATATTACATGAGGGAGGTCAGAACTGTTGTC TATTCCCAGTTCTTGGAATCCTACAAGAGTGTTACCATTGAAGCAATGGCTAAGGCTTTCGGGGTGACAGTGGATTTTATTGATCTGGAACTATCACGTT TCATTGCAGCAGGGAAGCTTCACTGCAAGATTGATAAGGTTGCAGGTGTTCTTGAAACCAACCGCCCTGATGCGAAGAACGCTCTCTACCAAGCAACTAT CAAGCAAGGAGACTTCTTATTGAACCGGATCCAGAAGCTGTCTCGCGTGATTGATCTTTGA
AA sequence Show only first row Show all	>Potri.015G090900.1 pacid=42776238 polypeptide=Potri.015G090900.1.p locus=Potri.015G090900 ID=Potri.015G090900.1.v4.1 annot-version=v4.1 MENQGETQQPHLVLSHKLFLLTHPDVQDIEKVRLKEEVLTTIKSDDMVPLYETLVAESLLEKDQSLLDSMRAKNEDELKKLDEKIADAEENLGESEVREA HLAKSLFYIRIGDKEKALEQLKVTEGKTVAVGQRMDLVFYTLQLAFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSSRNFKKAADLFLD SISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVV YSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24820			26S proteasome, regulatory sub...		Potri.015G090900 [exp]	0	1
AT5G45620			Proteasome component (PCI) dom...		Potri.003G098400 [exp]	2.23	0.8682
AT5G45620			Proteasome component (PCI) dom...		Potri.001G135200 [exp]	3.16	0.8998
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.010G152600 [exp]	6.00	0.8375	Pt-ARF1.6
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Potri.005G100500 [exp]	6.92	0.8335
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Potri.009G061600 [exp]	7.07	0.8949
AT2G40800			unknown protein		Potri.019G062200 [exp]	10.58	0.8398
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.011G103700 [exp]	12.00	0.8600
AT3G26340			N-terminal nucleophile aminohy...		Potri.010G058100 [exp]	13.49	0.8470	PBE1.1
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.003G086100 [exp]	14.79	0.8826
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.001G322300 [exp]	16.97	0.8764	PtrPht3-2

Compare expression of checked genes

Potri.015G090900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.