Plant FIBer expression Database

Potri.015G091500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50350 229 / 2e-67 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G094200
[exp]
774 / 0 AT5G50350 234 / 3e-69 unknown protein
Potri.008G012000
[exp]
91 / 5e-19 AT5G50350 54 / 3e-07 unknown protein
Potri.010G247100
[exp]
86 / 2e-17 AT5G50350 55 / 1e-07 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034861
[exp]
96 / 1e-20 AT5G50350 58 / 1e-08 unknown protein
Lus10033401
[exp]
92 / 2e-19 AT5G50350 57 / 3e-08 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G091500.1 pacid=42776661 polypeptide=Potri.015G091500.1.p locus=Potri.015G091500 ID=Potri.015G091500.1.v4.1 annot-version=v4.1
ATGGCAACCTCGGCGTTTAAATCCACGACAAAGAGAACACCTATCGGCAACGACAAGTCGTCTTCCTCTGCTCACCGGCGTTCACGGAGTCTGAGCCGCT
TCTCCCGACCGATTCCTCCCGACGACTTTTCCGATGATTCTACGGCTCCGTCGAGAGGGAAGTTCGTGAACATGGATAGAGGATCGGGAGTTCCGGATAT
AAGTCTCGACGATCTCGCTATTCAGTTGTTGAGTTTAGGTGATCGAGGGCGGTCGGGTTTTAGAAGTGGTGACGTCAGTCATGAGGAGAGAGTTGCGGGT
GGGTCCCTGAGGAGAGGAAGGTCTGTGTCGAGGCAAGGCAGTGAAAGTAAAAATAACAGCAAGAGTTACAGTCGTGGTGGTGGTGGGGGGAAGGTGAATT
CGGATGGTAGTAATTCGAGGAGGAGACGGTCTGTTTCTGTGGTTAGGTATCAAAATGGTGATTCCGAGAGTGACCCAGAGCATTCTCAGAATTCAAGAAA
TCATACTAATTCAAGACGTCAGAGCAACGGAAACAGCCAGGTCCCTTTATCAAATAAGCCACTAGCATCAAATCATAGACCCGGACTGAGAAGGTCTCTT
AGCCAGAAAGATTTGAAGTATCATGATGGCTACTCTAGCCATTCATCAAGCCTAACTGATGATGAAGGGAGGGATTCTTGTTCCAATAAAAATGGATTTG
AGAGAACAATACGAACAGTTTATGCACAGAAGAAGGCAGAGCATCCCACTGGCGATGATATGAACAGCGGGCTGTATGAAGCAATGAGAAAAGAACTTAG
GCATGCAGTAGAAGAGATCAGGATGGAACTTGAACAATCTATGGAGAAAACAAATATAGACTCCTTGAAATCTGGAAAATCTGATGGTTTTCAGGGTGGT
TCTACTATCATCAGAAGGAACCATGCAACAAAATCAGATCAGTCTGAGAAGTGTAAACAAGATTTATTAGCAAAGCTATTGTTGGAGAAGCAACATGGTA
GAGATATCTCGAAGATTGTGAAAGAATTGCTTGCTGATCCAAAGAACACTGTTTCAGAAAAGCCATCAAGAGCCAGAAAGAGGAGTAATGACAGAAGTAG
GATGTCTGAACGATTGACAGAAGAAGCAGAGAAATACTTTGAGGACTTCATTTCAAATGTTGAAGATACAGATATTTCGTCTTTGGATGGGGAAAGGAGT
GATACAAGTTCAACTTTAGGAGGAATAGCAAAGACAGAAACTTTTCAGAGACCAGTGATATCCAAATCTCAACCTGTAGAAATGGACGGTGTACTGCTGC
CCTGGTTACAATGGGAAACTTCTAATGATTCTTCTCCTCTATCCTTAAAAAATAAGGAGCTAACATCAACTCCAAAAAGTAATTTATGGGATGCAGCTCA
GGAAGCAACCCCTGCTCAAGAGTTGAGCATGCACCCCATCAGTAGCCGTGGAAGCTGTAGCCCAGGACTTACAGATGGCCACTCGACAAATATTAGAGAA
CTTAAAGGGAGTAAATTTGGAGAACTTGAAAGCTTCAGAAGACGAATTTCATTTAGAGGAACAAGGTCACAGTTTGACGTTGATGACTATCTTAAGCGAC
CAAGTGATGAAGATTTTCTCTTGGAAAGTTGGAAGCAACAACAGAGAATTCATTCAGGTGGTCTCCTGCTTTGCAATCGAATGTTTTTCTAG
AA sequence
>Potri.015G091500.1 pacid=42776661 polypeptide=Potri.015G091500.1.p locus=Potri.015G091500 ID=Potri.015G091500.1.v4.1 annot-version=v4.1
MATSAFKSTTKRTPIGNDKSSSSAHRRSRSLSRFSRPIPPDDFSDDSTAPSRGKFVNMDRGSGVPDISLDDLAIQLLSLGDRGRSGFRSGDVSHEERVAG
GSLRRGRSVSRQGSESKNNSKSYSRGGGGGKVNSDGSNSRRRRSVSVVRYQNGDSESDPEHSQNSRNHTNSRRQSNGNSQVPLSNKPLASNHRPGLRRSL
SQKDLKYHDGYSSHSSSLTDDEGRDSCSNKNGFERTIRTVYAQKKAEHPTGDDMNSGLYEAMRKELRHAVEEIRMELEQSMEKTNIDSLKSGKSDGFQGG
STIIRRNHATKSDQSEKCKQDLLAKLLLEKQHGRDISKIVKELLADPKNTVSEKPSRARKRSNDRSRMSERLTEEAEKYFEDFISNVEDTDISSLDGERS
DTSSTLGGIAKTETFQRPVISKSQPVEMDGVLLPWLQWETSNDSSPLSLKNKELTSTPKSNLWDAAQEATPAQELSMHPISSRGSCSPGLTDGHSTNIRE
LKGSKFGELESFRRRISFRGTRSQFDVDDYLKRPSDEDFLLESWKQQQRIHSGGLLLCNRMFF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50350 unknown protein Potri.015G091500
[exp]
0 1
AT3G22104 Phototropic-responsive NPH3 fa... Potri.007G118800
[exp]
1.00 0.9063
AT2G33590 NAD(P)-binding Rossmann-fold s... Potri.002G004100
[exp]
3.74 0.8830
AT4G39400 DWF2, CBB2, BIN... DWARF 2, CABBAGE 2, BRASSINOST... Potri.007G078100
[exp]
9.74 0.8381 Pt-BRI1.2
AT3G60340 alpha/beta-Hydrolases superfam... Potri.002G137200
[exp]
10.19 0.8411
AT1G58210 EMB1674 EMBRYO DEFECTIVE 1674, kinase ... Potri.002G106400
[exp]
11.61 0.7958
AT1G17260 AHA10 autoinhibited H\(+\)-ATPase is... Potri.001G161400
[exp]
18.57 0.8206 AHA10.1
AT2G28930 APK1B protein kinase 1B (.1.2.3) Potri.009G031300
[exp]
18.76 0.8238 APK1.1
AT4G38640 Plasma-membrane choline transp... Potri.009G132900
[exp]
20.00 0.8116
AT4G13730 Ypt/Rab-GAP domain of gyp1p su... Potri.006G069300
[exp]
21.90 0.8054
AT5G21482 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ... Potri.006G221000
[exp]
23.23 0.7869

Potri.015G091500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.