Plant FIBer expression Database

Potri.015G091700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48500 903 / 0 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTIVE 10, PIGMENT DEFECTIVE 312, Nucleic acid-binding, OB-fold-like protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005031
[exp]
669 / 0 AT3G48500 683 / 0.0 PLASTID TRANSCRIPTIONALLY ACTIVE 10, PIGMENT DEFECTIVE 312, Nucleic acid-binding, OB-fold-like protein (.1.2)
Lus10005030
[exp]
234 / 7e-73 AT3G48500 209 / 4e-64 PLASTID TRANSCRIPTIONALLY ACTIVE 10, PIGMENT DEFECTIVE 312, Nucleic acid-binding, OB-fold-like protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.015G091700.1 pacid=42776173 polypeptide=Potri.015G091700.1.p locus=Potri.015G091700 ID=Potri.015G091700.1.v4.1 annot-version=v4.1
ATGCAAATCCTCCGAACTCCTTTCCCTCTCTTCTCTTTACCCAAACCCCTAAACCCTTCCCTTAAACCCCACCATAAAAACCACCACCAGTTCCTCCTCC
TCCCTCGGCACCCTCTCTCCACCACTCTAACACCTCCAAAATCTTACAGCTCAGATGAATTCCCAGTAGACGAAACATTCCTTGAAAAATTCGCACCAAA
AGACCAAGAAACCGAAGACGAAGCTCGAAGAAAGAACTGGATTGTCCGTGGCTGGGCACCATGGGAAGAAATCCTAACCCCAGAAGCCGATTTCGCGAAA
AAGTCACTAAACGAAGGCGAAGAGGTCCCTCTTACAACCCCAGAAGCAATTGAAGCATTCAACATGTTATCTCCAAGTTACCGTTCGCAGAAAATTAAAG
AAATGGGGCTTACTGAAGATGAGTGGTATATGAAGCAATTTGAGATAAAAGGGGAGATACCGGATAAGTTGGAGACCGAATGGGCTAGTCCATTGGTTGT
TCGACAGGTGGCACCGAGGGACTGGCCGCCAAGAGGGTGGGAAGTGGATCGCAAGGAATTGGAGTTCATTAGGGAAGGGCATAAATTGCAAGGAGTTAGA
GTGAATTTGGAGGATTTGGAAAATGGGGTCGGTGTTGATAAGGAGAATATGTGTTTGGAGAGGTATAAGGTGTTCTTGAAGCAATATGAAGAGTGGGTTG
AGGCGAATAAGGATAGACTAGAAGAGGAGTCGTATAAGGAAGACCAAGATTATTATCCGGGTCGAAGAAAAAGAGGGAAAGACTATAAAGAGGGCATGTA
TGAGCTTCCATTTTATTACCCGGGGCAGATCTGTGAAGGAAAAGTTACCACTATACATCTATATCAAGGAGCCTTTGTTGATGTTGGAGGTGTGCATGAT
GGATGGATCCCAATTAAACGCAATGATTGGTTTTGGATTCGCCATCATATAAAAGTCGGTATGCATGTCATTGTTGAAATTCTGGCAAAGCGAGATCCTT
ATCGTTTTCGATTTCCACTTGAAATGCGTTTTGTCTATCCTAACATAGACCATCTTATCTTCAACAGATTTGAGTTTCCACCGGTATTTCATCGTGATGA
GGATACAAACCTGGATGAATTGCGGCGTGACTGTGGAAGACCTCCTGTTCCTAGGAGAGATCCTGAAGATAAACCGGAAGAGGAACCTCTATTGTCAAAT
CACCCTTATGTAGATAAGTTGTGGCAAATCCATGTTGCTGAGCAAACAATTTTGGATGATTGGGAGGCTAATCCTGAGAAATACAAGGGCAAAATGATAT
CCGAGTTGACTGATAATGAAGATTTTGATGAAGAAAATAGCATTGAATATGGTGAAGCTTATCATAAGAAAACAGTACTGCCTAAAGTGATTCTGAAAAC
GAGTGTTAAAGAACTTGACTTGGAAGCTGCCTTAGCCGAGCGTGAGTTTCATAATAAACTAAGAATGGAAGCAAAGGAAAGGGGAGAGAAATATAAAATC
ACCAAGCTGAGACGAAATATAGAAATGGATGAGTATGACTTGTTGCACTGGCGTCGATCATTTGAGGAAAGAGAAGCTTTGATCAGAGACATCAGCTGCC
GTCGAGCTCTTGGTCTGCCAGTGGAAGAACCAGGAAGGTACAAGCCAGCAAGTTTTTTTGGTAAGGACCAGTATGATCCTGAAAATCCTTTATACCGGTA
TGACTACTGGGGAGAACCCAAGAACTCGGAAAAGAGCAAGCAAGAGAGGATGACAGAGCTTCATAACAAATCTATTGTGGGAAAGGGCAACGTTTGGTAT
GAAATGTCTTATGATGATGCCATCGCACAACGAATGCAAAGGGAAGCCCGTGCAAAGGAAGAGAAGCAAGGAGTGGAAGAAGATTCAGACAGAGATTATG
ATGATGAGGATGATGACGACGATGACATTGATTTTAATCTCTTAGGTGACTTTGGTGTTGACTTGGCAAATCGCCCAGTAGTTAATGGCACTGAATCTGC
TGGACTATCAGATGAGGGTATGTTTGGCAATTAA
AA sequence
>Potri.015G091700.1 pacid=42776173 polypeptide=Potri.015G091700.1.p locus=Potri.015G091700 ID=Potri.015G091700.1.v4.1 annot-version=v4.1
MQILRTPFPLFSLPKPLNPSLKPHHKNHHQFLLLPRHPLSTTLTPPKSYSSDEFPVDETFLEKFAPKDQETEDEARRKNWIVRGWAPWEEILTPEADFAK
KSLNEGEEVPLTTPEAIEAFNMLSPSYRSQKIKEMGLTEDEWYMKQFEIKGEIPDKLETEWASPLVVRQVAPRDWPPRGWEVDRKELEFIREGHKLQGVR
VNLEDLENGVGVDKENMCLERYKVFLKQYEEWVEANKDRLEEESYKEDQDYYPGRRKRGKDYKEGMYELPFYYPGQICEGKVTTIHLYQGAFVDVGGVHD
GWIPIKRNDWFWIRHHIKVGMHVIVEILAKRDPYRFRFPLEMRFVYPNIDHLIFNRFEFPPVFHRDEDTNLDELRRDCGRPPVPRRDPEDKPEEEPLLSN
HPYVDKLWQIHVAEQTILDDWEANPEKYKGKMISELTDNEDFDEENSIEYGEAYHKKTVLPKVILKTSVKELDLEAALAEREFHNKLRMEAKERGEKYKI
TKLRRNIEMDEYDLLHWRRSFEEREALIRDISCRRALGLPVEEPGRYKPASFFGKDQYDPENPLYRYDYWGEPKNSEKSKQERMTELHNKSIVGKGNVWY
EMSYDDAIAQRMQREARAKEEKQGVEEDSDRDYDDEDDDDDDIDFNLLGDFGVDLANRPVVNGTESAGLSDEGMFGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G48500 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTI... Potri.015G091700
[exp]
0 1
AT1G63680 APG13, ATMURE, ... PIGMENT DEFECTIVE EMBRYO 316, ... Potri.001G103300
[exp]
1.00 0.9768 Pt-PDE316.1
AT5G39980 Tetratricopeptide repeat (TPR)... Potri.017G075700
[exp]
2.44 0.9766
AT3G14900 EMB3120 EMBRYO DEFECTIVE 3120, unknown... Potri.001G390600
[exp]
2.82 0.9633
AT1G23180 ARM repeat superfamily protein... Potri.008G131900
[exp]
4.24 0.9724
AT5G66520 Tetratricopeptide repeat (TPR)... Potri.004G237000
[exp]
4.47 0.9696
AT3G04260 PDE324, PTAC3 PIGMENT DEFECTIVE 324, plastid... Potri.019G025100
[exp]
5.47 0.9626
AT5G08540 unknown protein Potri.010G254800
[exp]
6.48 0.9634
AT5G62650 Tic22-like family protein (.1) Potri.017G148900
[exp]
6.63 0.9364
AT2G40720 Tetratricopeptide repeat (TPR)... Potri.001G258500
[exp]
6.63 0.9515
AT1G59720 CRR28 CHLORORESPIRATORY REDUCTION28,... Potri.018G092400
[exp]
7.21 0.9612

Potri.015G091700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.