Plant FIBer expression Database

Potri.015G092000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03860 969 / 0 MLS malate synthase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G094532
[exp]
396 / 4e-136 AT5G03860 374 / 9e-128 malate synthase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020565
[exp]
993 / 0 AT5G03860 953 / 0.0 malate synthase (.1.2)
Lus10006282
[exp]
914 / 0 AT5G03860 874 / 0.0 malate synthase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0151 PK_TIM PF01274 Malate_synthase Malate synthase
Representative CDS sequence
>Potri.015G092000.1 pacid=42775583 polypeptide=Potri.015G092000.1.p locus=Potri.015G092000 ID=Potri.015G092000.1.v4.1 annot-version=v4.1
ATGGGACCTGCAACTTATGAGAATCACTATCCACCGCCCAATATGAAGAAGTTTGGCTATGATGCTCCTGAAGGAGTTGAAATTAGAGGCAGATATGACG
GAGAGTTTGCAGTGATCCTTACCAAGGATGCTTTGCAATTTGTTGCTGATTTGCAGAGAGAGTTTAGGAACCGCATCAAGTATGCAATGGAGTGTCGCAA
GGAAGCCAAAAGGAGGTACAGTGAGGGGGCTTTACCAGGGTTTGATCCAGCTACAAGGTACATAAGGGAGGGGGAGTGGACATGTGCACCTGTCCCTCCA
GCTGTTGCTGATAGGAAGGTGGAGATTACAGGTCCAGTGGAGAGGAAAATGATCATCAATGCACTCAATTCTGGAGCTAAAGTTTTCATGGCTGACTTTG
AAGATGCACTGTCACCAAGTTGGGAGAACCTTATGAGAGGACAAGTTAACCTGAAGGACGCTGTCGCTGGGACTATTACCTTTCACGACAAGGTCAGGAA
CAGGGTTTATAAGCTGAATAACCAGACAGCCAAGTTGTTTGTCCGCCCACGAGGTTGGCATCTACCTGAGGCGCACATTCTCATTGATGGAGAACCAGCA
ACTGGTTGCCTTGTGGACTTTGGCCTTTACTTTTACCACAACTATGCAGCATTCCGTCGGATTCAGGGTGCAGGGTTCGGGCCTTTCTTCTATCTCCCTA
AGATGGAGAATTCAAGGGAGGCTAAGATATGGAACTGTGTGTTCGAGAAAGCAGAGAAGATGGCAGGAATTGAAAGGGGAAGCATCAGGGCCACTGTCCT
AATCGAAACACTTCCAGCTGTTTTCCAAATGAATGAAATCCTCTACGAACTAAGGGATCACTCTGTTGGCTTGAACTGCGGAAGATGGGATTACATCTTC
AGCTATGTCAAGACATTCCAGGCTCACCCAGATCGCCTGCTACCAGACAGGGTTCAAGTTGGCATGACTCAGCACTTCATGAAGAGTTACTCTGATCTCC
TCATCTGGACATGCCATAGGCGTGGTGTCCATGCGATGGGCGGCATGGCAGCTCAGATTCCAATCAGAGACGATCCAGAGGCGAATAATGAAGCACTAGA
ACTCGTGCGAAAGGACAAGCTAAGAGAGGTTCGAGCAGGACATGATGGAACATGGGCAGCCCACCCTGGACTTATCCCAGCTTGCATGGAAGTCTTCTCA
AACAACATGGGAAACACGCCAAACCAAATCCAGTCCATGAAGCGCGAAGATGCATCAACCATTACAGAGGAAGACCTCTTACAGAGGCCAAGAGGGTCCC
GTTCGTTGGAAGGTCTCCGCCTAAACACCCGTGTAGGAATCCAGTACTTAGCAGCATGGCTAACTGGAACTGGCTCAGTCCCTCTTTACAACCTCATGGA
AGACGCTGCCACTGCAGAAATCAGCAGAGTTCAGAACTGGCAATGGCTTAAATATGGAGTGGAACTTGACGGAGATGGCCTTGGAGTGAAAGTTAACAAT
GATCTGTTCGGGAAAGTGGTGGAAGAGGAAATGGCTAGGATTGAAAGGGAAGTTGGGAAAGAGAAATTCAAGAGGGGAATGTACAAGGAGGCCTGCAAGA
TTTTCGCAAGGCAATGCACAGCACCTACACTGGATGATTTTCTTACCCTGAATGCTTATGATAATATCGTCATCCATCACCCTATGGGATCATCATCCCG
CCTCTAA
AA sequence
>Potri.015G092000.1 pacid=42775583 polypeptide=Potri.015G092000.1.p locus=Potri.015G092000 ID=Potri.015G092000.1.v4.1 annot-version=v4.1
MGPATYENHYPPPNMKKFGYDAPEGVEIRGRYDGEFAVILTKDALQFVADLQREFRNRIKYAMECRKEAKRRYSEGALPGFDPATRYIREGEWTCAPVPP
AVADRKVEITGPVERKMIINALNSGAKVFMADFEDALSPSWENLMRGQVNLKDAVAGTITFHDKVRNRVYKLNNQTAKLFVRPRGWHLPEAHILIDGEPA
TGCLVDFGLYFYHNYAAFRRIQGAGFGPFFYLPKMENSREAKIWNCVFEKAEKMAGIERGSIRATVLIETLPAVFQMNEILYELRDHSVGLNCGRWDYIF
SYVKTFQAHPDRLLPDRVQVGMTQHFMKSYSDLLIWTCHRRGVHAMGGMAAQIPIRDDPEANNEALELVRKDKLREVRAGHDGTWAAHPGLIPACMEVFS
NNMGNTPNQIQSMKREDASTITEEDLLQRPRGSRSLEGLRLNTRVGIQYLAAWLTGTGSVPLYNLMEDAATAEISRVQNWQWLKYGVELDGDGLGVKVNN
DLFGKVVEEEMARIEREVGKEKFKRGMYKEACKIFARQCTAPTLDDFLTLNAYDNIVIHHPMGSSSRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03860 MLS malate synthase (.1.2) Potri.015G092000
[exp]
0 1
AT3G47570 Leucine-rich repeat protein ki... Potri.004G069001
[exp]
4.69 0.8532
AT5G03860 MLS malate synthase (.1.2) Potri.012G094532
[exp]
7.41 0.8740
AT4G23270 CRK19 cysteine-rich RLK (RECEPTOR-li... Potri.011G035850
[exp]
9.59 0.8179
AT5G01750 Protein of unknown function (D... Potri.016G131850
[exp]
10.81 0.8035
AT4G10780 LRR and NB-ARC domains-contain... Potri.017G035300
[exp]
11.31 0.8894
AT5G16970 AT-AER alkenal reductase (.1) Potri.017G004032
[exp]
12.48 0.8136
AT2G12550 NUB1 homolog of human NUB1, ubiquit... Potri.018G118143
[exp]
12.80 0.8030
AT3G07350 Protein of unknown function (D... Potri.004G184700
[exp]
15.58 0.7830
AT2G44970 alpha/beta-Hydrolases superfam... Potri.018G085600
[exp]
17.66 0.8458
AT4G20350 oxidoreductases (.1.2) Potri.013G161600
[exp]
20.85 0.8338

Potri.015G092000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.