Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67580 589 / 0 CDKG;2 Protein kinase superfamily protein (.1.2) AT5G63370 520 / 4e-177 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT5G10270 281 / 2e-86 CDKC;1 cyclin-dependent kinase C;1 (.1) AT5G64960 280 / 5e-86 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT1G20930 266 / 3e-83 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT3G48750 255 / 2e-79 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G76540 255 / 6e-79 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT2G38620 248 / 2e-76 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT1G18040 249 / 8e-76 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT5G50860 251 / 2e-74 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G094600 [exp] 1080 / 0 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G056900 [exp] 618 / 0 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G178200 [exp] 589 / 0 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G024600 [exp] 282 / 1e-86 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.004G133500 [exp] 269 / 2e-84 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.012G003700 [exp] 272 / 9e-83 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.012G103900 [exp] 262 / 3e-78 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.002G003400 [exp] 252 / 9e-78 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.004G226900 [exp] 260 / 1e-76 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015816 [exp] 586 / 0 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 579 / 0 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 295 / 8e-92 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 292 / 2e-90 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 288 / 2e-84 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10042588 [exp] 270 / 2e-81 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10035892 [exp] 257 / 2e-76 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10001285 [exp] 256 / 3e-75 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040593 [exp] 244 / 5e-75 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10025773 [exp] 256 / 7e-75 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.015G092100.1 pacid=42774772 polypeptide=Potri.015G092100.1.p locus=Potri.015G092100 ID=Potri.015G092100.1.v4.1 annot-version=v4.1 ATGGCGGCAGGGCGGCTCGATGTGTCTTTGAGAAGGGGTGGTGGCGGTGGTTATTTTGATGAGTTGAGGCGGGGTGGTGATCGTGGTGTGGTACGGAAAA ATGGGTATCATAGCTCAACAAGAGTGCGTAGTTTTGATTTTAAAAGAAGTGGGTTTAATTGTAGAGATGAAGAGCGACAGTGCGGGGAATTATGGCAATT TAATGCCTTTGGTGATTCCCCGAGGTATGAGGAAGGTGAGATATCAGGGAATGAAGATGGGGTTCAGTTGCCTCTAGAGAAGAAGAGGAGGTTTTCTCCT GCTGTATGGGACGCAGAGGAGAAAGAAGCGAGGATTTCTTTGAAGAATAGGGTTTTTCAAAGGAGCAGTACTCAGGGTTTAAATGTTGTTTCAGATGAGG ATGTCGTTAAAAGTTCTTTCAAAGGTGGATTGGAGCTTGTGGTAGATGAGGATCGTGTGGATGGAGGATCAGTTGATGGTATTGAATCTGAGTATCCAGC TCCTCAGTCTCCTTCATTGCCTCCAAAGAAAGATGGGGGTTATGGCCAAGAGCAAGACCAAGTGGAGGAGGAAGAGCTTCCCAATGCACGGAATATAGCC ATGTCCCGGTGGGCATCTGATGATGATTCTCCAAGGGATACCACTTTGGTTGATGATGAAGGCATGCATGGAGAAATTGTGTGCAGAACAAATTCCATTG AGAGAGAGGGGTGCCAGAGAGAAGTCTCAGATAGAGATAGATCAAGTTCACCTCCATCGGATGAAAGAGGTTACAGCATCAGCTTTCTATCCGAGCACGA ATTGCAAAATGATGCCATGGATGTTGATGATATAGGGGATGAAAATGCCAGTGTTAATGATATGGAGCAAACTGATGGTTGGATTGATGAGCCCACAACT ACTACCCAAAGGGGGATTAATATGCTAGAGGGTTGTAGAAGTGTGTTCAAGTATGAAAGACTCAATGAAATCAACGAAGGAACCTATGGTAAAGTGTACA AAGCCAGGGACAAGAAGACTGGAGAATTTGTGGCGTTGAAGAAAGTGAAGATGGATGTTGGAAGAGACAGGTACTTGGAAGAATATGGTTTTCCCCTGAC ATCATTGAGGGAGATTAACATTCTTATGTCTTTTGATCACCCTTCAATTGTAAAAGTTAAAGAAGTTGTGATGGGGGACCTTGATAGTGTTTTCATGGTG ATGGAATACATGGAACATGATCTCAAGGGGGTGACACAGGCAATGAAGCAGCCTTTCAGTACAAGTGAAGTCAAATGCTTAATGCTACAGCTTTTGGAAG GTGTCAAGTATCTTCATGATAATTGGGTGCTTCATAGGGATTTGAAAACATCGAACCTTCTTCTCAACAACAAGGGAGAGTTGAAAGTATGTGACTTCGG GATGTCACGCCAGTATAGTAGCCCATTGAAGCCATATACCTCTCTGGTGGTTACTTTGTGGTACAGGGCACCTGAACTTCTTCTTGGAGCAAAGCAATAT TCAACAGCAGTTGACATGTGGTCAGTAGGTTGCATAATGGCTGAAATGTTGACCAAGGAACCCCTATTCACAGGGAAAGGTGAAATTGATCAACTGGACA AGATCTTCAAAACTCTTGGAACACCAAATGAGACAACTTGGCCTGGGCTATCAAAATTGCCGGGGGCAAAAGCAAATTTTGTTAAGCAACCGTATAATCA GTTACGAAAGAAGTTTCCTTTCACGCCTTTCACAGGATCTCCAGTTCTCTCTGACTCGGGATTTGACTTGTTAAACAAACTCCTAACTTATGACCCAGAG AAGAGAATAACAGCAGATGATGCGCTTAATCATCCTTGGTTTCATGAGGTTCCTCTACCAAAATCAAAAGAATCCATGCCTACTTTCCCCCCTCAGTATG CAAAGAAAAGGCATAATCGAAGAACAATGAAATGCCTAGATTTCAGGAGGAGCAGTGAAGGAAGGCAGTACCAGGTGTTATCTGGCATGTATTGGTGCAT ATCATCCTCTGGGATTTACAGCCTTCTTTATAATGATCCTCTACCCTCTTTGACCCACAAGGTCCTGAGTATTGACCTTTTTTCTTTGTCTTTGATTGTT CTGTTCTCTTTGAATCAGCTTGAGTTCCGAATGAGTGCCAATATTCTCAACTCAGTTAATTGA
AA sequence Show only first row Show all	>Potri.015G092100.1 pacid=42774772 polypeptide=Potri.015G092100.1.p locus=Potri.015G092100 ID=Potri.015G092100.1.v4.1 annot-version=v4.1 MAAGRLDVSLRRGGGGGYFDELRRGGDRGVVRKNGYHSSTRVRSFDFKRSGFNCRDEERQCGELWQFNAFGDSPRYEEGEISGNEDGVQLPLEKKRRFSP AVWDAEEKEARISLKNRVFQRSSTQGLNVVSDEDVVKSSFKGGLELVVDEDRVDGGSVDGIESEYPAPQSPSLPPKKDGGYGQEQDQVEEEELPNARNIA MSRWASDDDSPRDTTLVDDEGMHGEIVCRTNSIEREGCQREVSDRDRSSSPPSDERGYSISFLSEHELQNDAMDVDDIGDENASVNDMEQTDGWIDEPTT TTQRGINMLEGCRSVFKYERLNEINEGTYGKVYKARDKKTGEFVALKKVKMDVGRDRYLEEYGFPLTSLREINILMSFDHPSIVKVKEVVMGDLDSVFMV MEYMEHDLKGVTQAMKQPFSTSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNKGELKVCDFGMSRQYSSPLKPYTSLVVTLWYRAPELLLGAKQY STAVDMWSVGCIMAEMLTKEPLFTGKGEIDQLDKIFKTLGTPNETTWPGLSKLPGAKANFVKQPYNQLRKKFPFTPFTGSPVLSDSGFDLLNKLLTYDPE KRITADDALNHPWFHEVPLPKSKESMPTFPPQYAKKRHNRRTMKCLDFRRSSEGRQYQVLSGMYWCISSSGIYSLLYNDPLPSLTHKVLSIDLFSLSLIV LFSLNQLEFRMSANILNSVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.015G092100 [exp]	0	1
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	3.46	0.7868
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	3.74	0.8096
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	5.29	0.7793
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.015G076650 [exp]	8.36	0.7701
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.005G148700 [exp]	14.96	0.7556
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.001G163200 [exp]	15.90	0.7452
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Potri.012G066300 [exp]	16.24	0.7243	ATDGK1.1
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.014G047600 [exp]	18.65	0.6824
AT5G13590			unknown protein		Potri.008G047600 [exp]	19.62	0.7101
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	19.97	0.7585

Compare expression of checked genes

Potri.015G092100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.