Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) AT3G20300 175 / 9e-50 Protein of unknown function (DUF3537) (.1) AT1G50630 161 / 1e-44 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT2G21080 150 / 8e-41 unknown protein AT4G22270 150 / 2e-40 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT4G03820 135 / 3e-35 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G094700 [exp] 714 / 0 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.008G178100 [exp] 445 / 2e-154 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.001G356200 [exp] 172 / 6e-49 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 166 / 2e-46 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 155 / 2e-42 AT2G21080 447 / 9e-156 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043011 [exp] 466 / 5e-163 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10011371 [exp] 424 / 6e-146 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 361 / 1e-122 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 350 / 5e-117 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 185 / 1e-53 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10002334 [exp] 182 / 1e-52 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 183 / 3e-51 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 168 / 5e-47 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 167 / 6e-47 AT2G21080 450 / 5e-157 unknown protein Lus10032512 [exp] 133 / 5e-38 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [poplar] [flax] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Potri.015G092200.1 pacid=42776126 polypeptide=Potri.015G092200.1.p locus=Potri.015G092200 ID=Potri.015G092200.1.v4.1 annot-version=v4.1 ATGGCAGTTGCTTACCCGCAAACAGATTACTCATCTTCTACGACCCAAATCCCTCTCATTTATGAAGACCAAGGAGATGAAGCCCATCTCTCCAAGTCTT TAAACCATTTAGAGACCTTTTTAAGGGTCTTTGGCTTTTGTCAGTATTCCTTTTTAAGCCTCATACTCTCATGGCTTTCTTTTCTGCTTCTTGGTATTGC TCTTCCTGCTGTCATGATCGAGTATTTGTCTCACTGTACTGACTGTAAGAAGTACCAAATTAGTAGCTTTGAGATTCAGGTTTTGGTGTTTCAGTCTTTA GTTGCTACCATTTCTCTTGCTTGTATTTCACATAACTTGAGGAAGTATGGGATCAGGAAGTTTCTATTTGTGGACCGGTTTCATGGACATATGGCACAGT ATCGTGATGAATATGTCAAGAAGATCAATGGTTTCTTCCGCTTGTTGGCTGTATGGCTGCTACCGTTCCTCGTCCTGAAGACTATCCGTGAGGCTGTTCG TGTAATATATGCTCCACGCCATTCTTGGGGACAATCTGTTGGTATTCTGATAGCTTTGGTTGTCTCGTGGACCTATTCGATTACTATATATTTATCAGGC TGTACTTTATTCAATTTAGTATGCAATTTTCAAGTGATTCACTTTGAGAATTATGGGAAGCTTTTAGAAAGGGATTTGCATGTTATGCAGTACATTGAGG AACACATTCGTCTAACACATTATCTGTCTAAGATAAGCCATAGGTTCCGAATATTTTTCGTTCTTGAGCTCCTGGTTGTGACAGCTAGCCAGGTCGTGGC TTTATTTCAAACTACATGGCATAGTGAAATTATCAATCTCGTCAATGGTGGTGATTTTGTGATCTCGTCTATAGTTGAGCTTGTTGGGTTAATAATTTCC CTGCAAGCTGCTGCGAAAATCACACATAGAGCTCAAGGCACTGGATCGGTTGCTGCTAAATGGCATTCTTTAGTTACATGTGCCTCTGATGACACTTCTC AAGTGGAAATAGGCACTAACAGTGGAGGCTCGGAGGCTGCCAATCCAAGCAACTTGTTACACATAAATTATTCAGAAAGTGATTTGGAGGCAGTTGACTA TGTGCCAGTGCCAACCACCACTCAGTTGGCTTCATACATGTCCTCATATCACAAGAGACAATCGTTTGTGATGTATTTGCAGTCCAATCCTGGTGGGTTT ACTGTTTTTGGATGGAGAGTTGATCGGACACTCATCAACACTATCTTCTTTTTGGAGATTTCACTAGTTCTTTTTGTACTGGGGAAGACCGTAACTCTCT ATCATTCTTGA
AA sequence Show only first row Show all	>Potri.015G092200.1 pacid=42776126 polypeptide=Potri.015G092200.1.p locus=Potri.015G092200 ID=Potri.015G092200.1.v4.1 annot-version=v4.1 MAVAYPQTDYSSSTTQIPLIYEDQGDEAHLSKSLNHLETFLRVFGFCQYSFLSLILSWLSFLLLGIALPAVMIEYLSHCTDCKKYQISSFEIQVLVFQSL VATISLACISHNLRKYGIRKFLFVDRFHGHMAQYRDEYVKKINGFFRLLAVWLLPFLVLKTIREAVRVIYAPRHSWGQSVGILIALVVSWTYSITIYLSG CTLFNLVCNFQVIHFENYGKLLERDLHVMQYIEEHIRLTHYLSKISHRFRIFFVLELLVVTASQVVALFQTTWHSEIINLVNGGDFVISSIVELVGLIIS LQAAAKITHRAQGTGSVAAKWHSLVTCASDDTSQVEIGTNSGGSEAANPSNLLHINYSESDLEAVDYVPVPTTTQLASYMSSYHKRQSFVMYLQSNPGGF TVFGWRVDRTLINTIFFLEISLVLFVLGKTVTLYHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67570			Protein of unknown function (D...		Potri.015G092200 [exp]	0	1
AT4G36880		CP1	cysteine proteinase1 (.1)		Potri.005G141600 [exp]	2.44	0.7070
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.010G118000 [exp]	7.07	0.5981
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Potri.004G099100 [exp]	10.67	0.5771	DIN9.2
AT1G06930			unknown protein		Potri.013G156100 [exp]	17.66	0.5973
AT2G16250			Leucine-rich repeat protein ki...		Potri.004G155100 [exp]	18.33	0.5583
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.009G155800 [exp]	29.84	0.5473
AT1G03670			ankyrin repeat family protein ...		Potri.011G133300 [exp]	30.19	0.5939
AT3G01860			unknown protein		Potri.008G176300 [exp]	30.90	0.5925
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.006G098100 [exp]	35.00	0.5678	Pt-MDPIP1.4
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G034500 [exp]	43.16	0.5564

Compare expression of checked genes

Potri.015G092200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.