Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29320 496 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 46 / 4e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 46 / 4e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 45 / 9e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G18140 42 / 0.0003 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 42 / 0.0007 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095100 [exp] 727 / 0 AT1G29320 458 / 1e-159 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 49 / 5e-06 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 47 / 2e-05 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G052800 [exp] 44 / 0.0001 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 44 / 0.0002 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023861 [exp] 563 / 0 AT1G29320 455 / 2e-158 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020991 [exp] 498 / 4e-177 AT1G29320 413 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 49 / 1e-05 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 48 / 1e-05 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 44 / 0.0003 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10042333 [exp] 43 / 0.0003 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037500 [exp] 43 / 0.0005 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10041007 [exp] 43 / 0.0005 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G092400.2 pacid=42775605 polypeptide=Potri.015G092400.2.p locus=Potri.015G092400 ID=Potri.015G092400.2.v4.1 annot-version=v4.1 ATGCCGCGAACTACGACATTAGAGTGTCCTGGTTGCCCTCCACTTCGAGCTCTAACTTTTGACTCACTTGGTCTCATCAAAGTGATTGAGTCTCGTGGTG AAAGAGGAATACCTCAGGTTGTTGAAAGATGGGGTGATCCTGATTCCTCCAAATGCGTGCTTGCTGCTTCCATTGATGACCGTAAAAAGGACCCTTTATT GGCTGTTGCAAGGAAAAATGGAGAGGTTGAAGTACTCAACCCTCTTAATGGGGAAATTCGTGTTGTGTTTTCTAATGTTGTCGAGGATGGTGTTCAACCT GAAGATGATGCTATTGCTGGTTTGCATTTATTCAAGAGAGAGAGATCAACTGGATCATGTGCTTTGCTTACATGTACAACAAAGGGAAATGCAAGCATGA GGTCCATTGGAGTTGATAAATCGATGGCTGATGTGGCCAATACCAGTGTAACAAAGACGTGGAAAGTTTGTGGTTCTGGCAATGTCTTATGTTCTAAAGT GGATGGAAGTGAAAATTATGCTGTGTTTGGAGGGAAAGGTGTTGAAGTTAATCTATGGGACCTTGAGAGTTCTACTAAGATTTGGACTGCAAAACCTCCT CCTAAAAATAGCCTTGGAATATTCACCCCAACTTGGTTTACATGCACAACATTCCTGAGCAATGATGATCACCGTAAATTTGCAGCTGGCACCAACATTC ATCAGGTCCGTTTATATGATATCTCTGCTCAGCGCAGACCTGTCCTGTCATTTGACTTCAGAGAGACCGCTATTAAGGCAGTCACTGAAGATCAAGATGG CCATACGATCTATATAGGAAATGGGTCTGGTGACCTTGCTTCCTTCGACATGCGAACAGGGAAATTATTAGGATGCTTTATAGGGAAGTGTTCTGGAAGT ATTAGATCCATGGCTAGGCATCCAGAGCTCCCTGTGATAGCATCATGTGGTTTGGATAGCTATTTGAGGTTGTGGGATATAAAGACTCGTCAACTTCTTT CTGCGGTTTTCCTGAAGCAGCACCTCACAAATGTTGTTTTTGATTCCAATTTTGTTGACAAAGAAATTGCGGCAACAGCACAGAATGTGGATGGGATCCA AACTACTGAGATTCAAACTGAAGATGAGATTGGAACATTGCCTGTGAAAAGAAAGAAAGCATCTAAAGAAAAAAGGGAGAAAAAGAAGAAATCTGAAGAA AATGAAGAAAGCGCGGTGACGAAATCCAAGAAAAAAGGCCGGAAGCACAAAAGGGAGAATAGCGATGACGCCTGA
AA sequence Show only first row Show all	>Potri.015G092400.2 pacid=42775605 polypeptide=Potri.015G092400.2.p locus=Potri.015G092400 ID=Potri.015G092400.2.v4.1 annot-version=v4.1 MPRTTTLECPGCPPLRALTFDSLGLIKVIESRGERGIPQVVERWGDPDSSKCVLAASIDDRKKDPLLAVARKNGEVEVLNPLNGEIRVVFSNVVEDGVQP EDDAIAGLHLFKRERSTGSCALLTCTTKGNASMRSIGVDKSMADVANTSVTKTWKVCGSGNVLCSKVDGSENYAVFGGKGVEVNLWDLESSTKIWTAKPP PKNSLGIFTPTWFTCTTFLSNDDHRKFAAGTNIHQVRLYDISAQRRPVLSFDFRETAIKAVTEDQDGHTIYIGNGSGDLASFDMRTGKLLGCFIGKCSGS IRSMARHPELPVIASCGLDSYLRLWDIKTRQLLSAVFLKQHLTNVVFDSNFVDKEIAATAQNVDGIQTTEIQTEDEIGTLPVKRKKASKEKREKKKKSEE NEESAVTKSKKKGRKHKRENSDDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29320			Transducin/WD40 repeat-like su...		Potri.015G092400 [exp]	0	1
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G187766 [exp]	2.23	0.7951
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	6.48	0.7611
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.002G182600 [exp]	9.79	0.7408
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.016G041200 [exp]	11.48	0.7572	Pt-NAP57.1
AT1G50920			Nucleolar GTP-binding protein ...		Potri.009G054000 [exp]	11.48	0.7358
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.010G246500 [exp]	11.95	0.7365
					Potri.004G065500 [exp]	14.56	0.6523
AT2G40360			Transducin/WD40 repeat-like su...		Potri.004G222500 [exp]	14.59	0.7576
AT1G56110		NOP56	homolog of nucleolar protein N...		Potri.012G095400 [exp]	15.00	0.7448	NOP56.2
AT3G57000			nucleolar essential protein-re...		Potri.006G040600 [exp]	16.43	0.7378

Compare expression of checked genes

Potri.015G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.