Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20090 189 / 9e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) AT4G22310 65 / 7e-15 Uncharacterised protein family (UPF0041) (.1) AT4G14695 62 / 9e-14 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2) AT4G05590 60 / 6e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095133 [exp] 197 / 2e-67 AT5G20090 199 / 5e-68 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.001G333902 [exp] 144 / 3e-46 AT5G20090 144 / 5e-46 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.011G023100 [exp] 67 / 2e-15 AT4G22310 205 / 3e-70 Uncharacterised protein family (UPF0041) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025851 [exp] 181 / 2e-60 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Lus10038250 [exp] 181 / 2e-60 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Lus10023745 [exp] 67 / 2e-15 AT4G22310 206 / 1e-70 Uncharacterised protein family (UPF0041) (.1) Lus10011790 [exp] 65 / 1e-14 AT4G22310 202 / 3e-69 Uncharacterised protein family (UPF0041) (.1) Lus10032564 [exp] 63 / 5e-14 AT4G22310 163 / 5e-54 Uncharacterised protein family (UPF0041) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03650 [poplar] [flax] MPC Mitochondrial pyruvate carriers
Representative CDS sequence Show only first row Show all	>Potri.015G092500.1 pacid=42774756 polypeptide=Potri.015G092500.1.p locus=Potri.015G092500 ID=Potri.015G092500.1.v4.1 annot-version=v4.1 ATGGCTGCTTACTTCAGAACATTCTTGAACAGTCCCGTTGGTCCGAAGACAACTCACTTTTGGGGACCTGTTGCCAACTGGGGATTTGTTGCTGCTGGGT TGGTGGATATGAAAAACCCCCCAGAAAAGATTTCAGGAAATATGACAGGAGCTATGTGTGTTTGCTCGGCATTGCTTATGAGGTTTGCGTGGATGGTACA GCCTCGAAACTATCTACTTCTAGCATGCCATGCTTCAAATGAGACTGTGCAGCTCTATCAATTGTCCCGTTGGGCAAAGGGTCAGGGGTACTTGCCATCG GAGAAAAAGGAGGAAACCAGATCTCCGTAA
AA sequence Show only first row Show all	>Potri.015G092500.1 pacid=42774756 polypeptide=Potri.015G092500.1.p locus=Potri.015G092500 ID=Potri.015G092500.1.v4.1 annot-version=v4.1 MAAYFRTFLNSPVGPKTTHFWGPVANWGFVAAGLVDMKNPPEKISGNMTGAMCVCSALLMRFAWMVQPRNYLLLACHASNETVQLYQLSRWAKGQGYLPS EKKEETRSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20090			Uncharacterised protein family...		Potri.015G092500 [exp]	0	1
AT5G47530			Auxin-responsive family protei...		Potri.006G015000 [exp]	2.23	0.7740
					Potri.019G120400 [exp]	2.82	0.8204
AT1G36380			unknown protein		Potri.002G090100 [exp]	3.46	0.8347
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G019600 [exp]	10.39	0.7422
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.004G127200 [exp]	10.58	0.7822
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	14.00	0.7719
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Potri.001G299700 [exp]	18.33	0.7339
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Potri.007G126600 [exp]	24.00	0.6857
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.014G151700 [exp]	25.76	0.7701
AT4G10610		ATRBP37, RBP37,...	RNA-BINDING PROTEIN 37, CTC-in...		Potri.011G152700 [exp]	25.98	0.6834

Compare expression of checked genes

Potri.015G092500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.