Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63390 697 / 0 O-fucosyltransferase family protein (.1) AT2G44500 538 / 0 O-fucosyltransferase family protein (.1.2) AT3G07900 502 / 5e-173 O-fucosyltransferase family protein (.1) AT5G35570 266 / 9e-81 O-fucosyltransferase family protein (.1) AT1G20550 263 / 1e-80 O-fucosyltransferase family protein (.1) AT5G64600 262 / 1e-80 O-fucosyltransferase family protein (.1) AT1G76270 261 / 1e-79 O-fucosyltransferase family protein (.1) AT5G01100 257 / 1e-77 O-fucosyltransferase family protein (.1) AT1G22460 255 / 1e-77 O-fucosyltransferase family protein (.1) AT3G54100 251 / 2e-75 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227000 [exp] 567 / 0 AT2G44500 754 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.009G022500 [exp] 564 / 0 AT2G44500 744 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.012G095166 [exp] 342 / 6e-116 AT5G63390 287 / 5e-95 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 273 / 4e-85 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 268 / 5e-83 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 261 / 3e-80 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 256 / 4e-78 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 256 / 2e-77 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 255 / 2e-77 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003914 [exp] 551 / 0 AT2G44500 765 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10037475 [exp] 504 / 2e-175 AT2G44500 672 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10008719 [exp] 273 / 9e-85 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 262 / 4e-80 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 260 / 4e-80 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 260 / 1e-79 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 259 / 1e-78 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 258 / 3e-78 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 256 / 7e-77 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 255 / 2e-76 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.015G092600.1 pacid=42776032 polypeptide=Potri.015G092600.1.p locus=Potri.015G092600 ID=Potri.015G092600.1.v4.1 annot-version=v4.1 ATGGCGAAATCAAGAAACATCAAGAACCCAATCTTTACACTAACCCCATCACCAGTTTATCACTTGCTCTCTGCCTCTCCATTCACTTCTCTTCTTTTCT CTCCCAAGAAAAGCCCGAGAAACTACAACAAACTCTTGACACCACCAACTCTATGCTTAATTTCACTTCTTGTTTCCATGACTCTCTTTGGAGTTTCCAT TCTTGGCTTCACATCCAATTCTCAAGATTCACTTCCATGCTCTCTAAACTCTCCATCTTCTCTTTCATTTCCTTCTATGTCCATTTCGTCAATGCTTTTG ACCTCCCTTTCTTCTGTTGTTCCCAAGAATGTGGAAGATGAGCCAAGAATGGCAAAGACTTTAATGGCGCCATTACCACTGCAGCCCGTTACTGGCAATG TGTCAAAAGAGGAGAAAGAGTTTTGGGAGCAACCGGATGGAAAAGGGTACAAGCCATGCTTGGATTTTAGTCTCAAGTATCGAAAGGCATCTGCGAGAAT TTCAAAGGAGAGAAGGAGGTTCTTGGTGGTGGTAGCCTCCGGGGGATTGAACCAGCAGAGGAATCAGATTGTTGATGCTGTTGTCATTGCAAGAATTCTT GAAGCAGCTTTGGTTGTTCCTGTTTTGCAGGTTAATCCAATTTGGGACGATGAGAGTGAATTCTCGGAGATTTTCAATGTTGAGCATTTCAAGAGAGTTT TACGAGCTGATGTACGAATTGTATCGTCCCTTCCCTCCACACATTTGATGTCAAGGCAGTCCATTGAAAACCAAATTCCTTATGATGTTTCACCGTATTG GATTCGTGCCAGGTTCTCCAGACTGCTGAATGAAGAAGGCCTTCTTATTCTAAAAGCATTAGACTCCAAACTTTCCAAGAATCTTCCCCCTGATCTGCAG AAGCTGCGATGCAAGGTTGCCTTCCATGCATTGAGATTTGCAGCACCAATACAGGATCTTGGGAACAGGCTTTCAAAGAGAATGTGGATTGAAGGTCCAT ATATTGCCCTCCATCTCAGGTTAGAGAAGGATATCTGGGTCAGAAGTGGATGTCTCAGCAGTTTAGGCCCAGAATATGACAAAATCATCGCCAAATCACG GGAGTCTCAGCCTGAATACCTTACAGGAAGGTTGAACATGAACCATATCCGGCGAAGACTTGCCGGCCTATGTCCCCTTAGTGCACTAGAAATTGCAAGG TTTTTAAAGGCTTTAGGAGCACCAAGCACTGCTCGAATATACATTGCTGGAGGAGAGCCATTTGGTGGCAGCCTGGCTCTGCAACCACTGATTGCCGAAT TCCCAAACGTAATAACAAAGGAGATATTGGCAAGAGGAGGTGAACTGTCACCATTTATCAAGAAGGCCTCAGCTCTGGCTGCTATAGACTACATCATCTC ATTAAGCAGCAACGTCTTTATACCTTCCCATGGAGGAAACTTCGGTCGAGTCATGCAGGGTCACCGTGCTTATGCTGGTCATAAGAAACACATAAGGCCT AACAAGCGAGCCATGCTTCCCGTATTCGAAAACTCCACCTTTGAATTCGGAAGCATCATCAGGACGCTGCACAAGAAATCTCAGGGCCAACCTGAGCCAA GGACTAACAAGAGAGACCGAGATGTGATTGCATATCCAGTTCCTGAATGTATGTGCAAGCACCGAACACCAATTTTTTGA
AA sequence Show only first row Show all	>Potri.015G092600.1 pacid=42776032 polypeptide=Potri.015G092600.1.p locus=Potri.015G092600 ID=Potri.015G092600.1.v4.1 annot-version=v4.1 MAKSRNIKNPIFTLTPSPVYHLLSASPFTSLLFSPKKSPRNYNKLLTPPTLCLISLLVSMTLFGVSILGFTSNSQDSLPCSLNSPSSLSFPSMSISSMLL TSLSSVVPKNVEDEPRMAKTLMAPLPLQPVTGNVSKEEKEFWEQPDGKGYKPCLDFSLKYRKASARISKERRRFLVVVASGGLNQQRNQIVDAVVIARIL EAALVVPVLQVNPIWDDESEFSEIFNVEHFKRVLRADVRIVSSLPSTHLMSRQSIENQIPYDVSPYWIRARFSRLLNEEGLLILKALDSKLSKNLPPDLQ KLRCKVAFHALRFAAPIQDLGNRLSKRMWIEGPYIALHLRLEKDIWVRSGCLSSLGPEYDKIIAKSRESQPEYLTGRLNMNHIRRRLAGLCPLSALEIAR FLKALGAPSTARIYIAGGEPFGGSLALQPLIAEFPNVITKEILARGGELSPFIKKASALAAIDYIISLSSNVFIPSHGGNFGRVMQGHRAYAGHKKHIRP NKRAMLPVFENSTFEFGSIIRTLHKKSQGQPEPRTNKRDRDVIAYPVPECMCKHRTPIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63390			O-fucosyltransferase family pr...		Potri.015G092600 [exp]	0	1
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.012G060700 [exp]	10.09	0.6240
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.007G099000 [exp]	12.12	0.6069
					Potri.005G022400 [exp]	13.49	0.5744
AT4G38140			RING/U-box superfamily protein...		Potri.004G209600 [exp]	19.36	0.5729
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Potri.006G219700 [exp]	20.49	0.5774
AT1G64295			F-box associated ubiquitinatio...		Potri.001G462650 [exp]	21.90	0.5686
AT4G34040			RING/U-box superfamily protein...		Potri.005G139900 [exp]	24.00	0.5283
					Potri.004G189850 [exp]	24.45	0.5297
AT1G49330			hydroxyproline-rich glycoprote...		Potri.016G080300 [exp]	26.32	0.4838
AT2G33100		ATCSLD1	CELLULOSE-SYNTHASE LIKE D1, ce...		Potri.001G050200 [exp]	27.22	0.5042	Pt-ATCSLD1.2

Compare expression of checked genes

Potri.015G092600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.