Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60160 818 / 0 Zn-dependent exopeptidases superfamily protein (.1) AT5G04710 603 / 0 Zn-dependent exopeptidases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095200 [exp] 923 / 0 AT5G60160 810 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Potri.008G021700 [exp] 589 / 0 AT5G04710 785 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Potri.010G237667 [exp] 43 / 3e-05 AT5G04710 54 / 7e-10 Zn-dependent exopeptidases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022460 [exp] 823 / 0 AT5G60160 800 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Lus10016765 [exp] 799 / 0 AT5G60160 774 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Lus10034142 [exp] 550 / 0 AT5G04710 796 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF02127 [poplar] [flax] Peptidase_M18 Aminopeptidase I zinc metalloprotease (M18)
Representative CDS sequence Show only first row Show all	>Potri.015G092700.1 pacid=42774816 polypeptide=Potri.015G092700.1.p locus=Potri.015G092700 ID=Potri.015G092700.1.v4.1 annot-version=v4.1 ATGGCAAATAATAACAAAGAACAAGAATACTGCGTTGCCTCTGATCTCATCGACTTCTTAAACGCTTCTCCAACAGCTTTTCATGCCGTCGAGGAGGCAA AGAGGAGATTGAAGAATGCAGGATACGAGCAGGTTTCAGAGAGACACGATTGGAAATTGGAAGCTGGAAAGCGTTATTTCTTCACCAGGAATCACTCTAC CATCCTTGCTTTCGCTATTGGTAAAAAATATGTAGCAGGCAATGGATTTTATATAGTTGGTGCTCACACTGATAGTCCTTGTCTCAAGTTGAAGCCTGTT TCCAAGGTAACGAAAGGTGGGTTTTTGGAGGTTGGAGTTCAAACATATGGAGGTGGTTTGTGGCATACATGGTTCGACCGTGACTTGACAGTGGCAGGGA GGGTGATTGTAAAAGAAGAAAAGGATGGTTTGGTTTCCTACTCACATCGGCTAGTTAGAATTGAGGAACCCATTATGCGTGTCCCTACAATTGCAATTCA CTTAGAGAGGACTGTTAATACTGATGGATTTAAGGTGAACACACAGAGTCAACTTCTTCCTGTCTTGGCAACATCAATTAAGGCAGAGCTCAATAAAGCC GCCGCTGAAAATGGTCCAGTTAAGAGTGAAGAAGTTCAAGCTGATGGGAAGAAATCTGATAAAGGAACGATTTCCTCAAAGCACCACTCACTTGTACTAG AGATGATTGCAAATCAGATTGGGTGCAAAGTAGATGATATATGTGACTTTGAATTACAAGCATGCGATACTCAACCAAGTCTAATAGCTGGAGCTGCAAA GGAATTTATTTTCTCTGGAAGGCTCGATAACCTCTGCAGCTCATTCTGCTCTCTGAAGGCACTGATAGATGCAACATCTTCTGAAAGCGACCTTGAGGAT GAGAGTGGTGTTAGGATGGTGGCATTGTTTGACCATGAAGAGATAGGATCTGATTCAGCACAAGGAGCCGGGTCTCCTGTCATGTTAGATGCTCTGTCAC GAATCACAAGTTCTTTCAACTCAGATTCCAAGCTGCTTCCAAAGGCAATCCAGAAGAGTTTCCTTGTATCTGCTGACATGGCTCATGCCCTCCATCCTAA TTATATGGACAAGCATGAAGAAAATCATCAGCCCAAGTTGCATGGTGGGCTTGTAATCAAACACAACGCGAATCAGCGCTACGCAACAAATGCAATCACT AGCTTTTTATTTAGGGAGATAGCAACGAAGCATGACCTTCCCACCCAGGATTTTGTGGTCCGAAATGACATGGGCTGTGGTTCAACTATCGGTCCAATCC TAGCTAGTGGTGTTGGGATTCGTACTGTTGACGTTGGTGCTCCACAACTATCGATGCACAGTATAAGAGAAATGTGTTCTGTTGATGATGTCAAGTATTC CTATGAGCATTTCAAGGCATTTTTCCAGGATATCTCTCATCTGGATGCTAAGATTACAGTTGATATGTAG
AA sequence Show only first row Show all	>Potri.015G092700.1 pacid=42774816 polypeptide=Potri.015G092700.1.p locus=Potri.015G092700 ID=Potri.015G092700.1.v4.1 annot-version=v4.1 MANNNKEQEYCVASDLIDFLNASPTAFHAVEEAKRRLKNAGYEQVSERHDWKLEAGKRYFFTRNHSTILAFAIGKKYVAGNGFYIVGAHTDSPCLKLKPV SKVTKGGFLEVGVQTYGGGLWHTWFDRDLTVAGRVIVKEEKDGLVSYSHRLVRIEEPIMRVPTIAIHLERTVNTDGFKVNTQSQLLPVLATSIKAELNKA AAENGPVKSEEVQADGKKSDKGTISSKHHSLVLEMIANQIGCKVDDICDFELQACDTQPSLIAGAAKEFIFSGRLDNLCSSFCSLKALIDATSSESDLED ESGVRMVALFDHEEIGSDSAQGAGSPVMLDALSRITSSFNSDSKLLPKAIQKSFLVSADMAHALHPNYMDKHEENHQPKLHGGLVIKHNANQRYATNAIT SFLFREIATKHDLPTQDFVVRNDMGCGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCSVDDVKYSYEHFKAFFQDISHLDAKITVDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60160			Zn-dependent exopeptidases sup...		Potri.015G092700 [exp]	0	1
AT4G11640		ATSR	serine racemase (.1)		Potri.001G106000 [exp]	2.64	0.8593
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.010G148100 [exp]	3.16	0.8316	Pt-GAL1.3
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Potri.011G043500 [exp]	19.62	0.7215
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Potri.012G038900 [exp]	20.19	0.8118
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	27.05	0.7870
AT1G14300			ARM repeat superfamily protein...		Potri.019G092000 [exp]	30.03	0.7190
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.007G064800 [exp]	31.65	0.7016
AT4G35750			SEC14 cytosolic factor family ...		Potri.002G014700 [exp]	36.59	0.7683
AT1G67325			Ran BP2/NZF zinc finger-like s...		Potri.003G172500 [exp]	38.26	0.7694
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.001G092500 [exp]	56.25	0.7654

Compare expression of checked genes

Potri.015G092700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.