Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63400 425 / 6e-153 ADK1 adenylate kinase 1 (.1.2) AT5G50370 404 / 1e-144 Adenylate kinase family protein (.1) AT5G35170 135 / 1e-36 adenylate kinase family protein (.1.2) AT5G47840 124 / 3e-34 AMK2 adenosine monophosphate kinase (.1) AT2G37250 110 / 8e-29 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 103 / 4e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26667 90 / 1e-21 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 85 / 5e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G25280 82 / 1e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01820 51 / 2e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095300 [exp] 466 / 8e-169 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.013G103400 [exp] 139 / 1e-39 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 135 / 2e-38 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 125 / 7e-33 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.008G046100 [exp] 118 / 9e-32 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.010G215300 [exp] 105 / 7e-27 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.014G104700 [exp] 91 / 3e-22 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G043300 [exp] 85 / 7e-20 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 83 / 3e-19 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016757 [exp] 455 / 1e-164 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10022453 [exp] 446 / 6e-161 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2) Lus10037995 [exp] 119 / 5e-33 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10036326 [exp] 121 / 1e-31 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10009478 [exp] 114 / 1e-31 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10001984 [exp] 111 / 3e-29 AT2G37250 391 / 4e-138 adenosine kinase (.1) Lus10040358 [exp] 109 / 3e-28 AT2G37250 405 / 1e-143 adenosine kinase (.1) Lus10030296 [exp] 108 / 8e-28 AT2G37250 395 / 1e-139 adenosine kinase (.1) Lus10023476 [exp] 107 / 1e-27 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10009228 [exp] 104 / 8e-27 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00406 [poplar] [flax] ADK Adenylate kinase CL0023 [poplar] [flax] PF05191 [poplar] [flax] ADK_lid Adenylate kinase, active site lid
Representative CDS sequence Show only first row Show all	>Potri.015G092800.1 pacid=42776610 polypeptide=Potri.015G092800.1.p locus=Potri.015G092800 ID=Potri.015G092800.1.v4.1 annot-version=v4.1 ATGGCAGGCAGTGCAGCAGCAGCAGCAAACTTGGAAGATGTGCCATCACTGGATCTCATGAGTGAGCTCCTCCGTCGCCTGAAGTGTTCTGACAAACCCG ACAAGCGTCTCATACTCATCGGCCCTCCTGGATCTGGAAAAGGTACTCAATCACCAATCATTAAGGATGAGCACTGTCTATGCCACTTGGCTACTGGTGA TATGTTGAGAGCTGCTGTTGCTGCTAAAACCCCTCTTGGCATCAAGGCTAAGGAAGCAATGGAAAAGGGGGAACTTGTTTCTGATGACTTGGTTGTTGGC ATTATAGATGAAGCAATGAAAAAACCTTCATGTCAGAAAGGTTTCATTCTAGATGGATTTCCAAGGACTGTGGTCCAAGCACAGAAGCTTGATGACATGC TTCAAAAGCAGGGAAGTAAAATTGATAAGGTGCTGAATTTTGCAATTGATGATGCAATTTTGGAGGAGAGGATCACAGGTCGCTGGATCCATCCTTCTAG TGGTAGAACCTACCATACAAAATTTGCACCTCCCAAGGCTCCTGGTGTTGATGATGTAACTGGAGAACCTTTGATTCAACGCAAAGATGATACTGCCGCT GTTCTTAAGTCAAGGCTGGAGGCATTTCACAAGCAAACTGAACCGGTTATTGATTATTATAAGAAGAAAGGTGCTGTTGCAGAGCTTCATGCAGAGAAAC CTCCAAAGGAGGTTACAACTGAGGTTAAGAAAGTGCTTTCCTCTTGA
AA sequence Show only first row Show all	>Potri.015G092800.1 pacid=42776610 polypeptide=Potri.015G092800.1.p locus=Potri.015G092800 ID=Potri.015G092800.1.v4.1 annot-version=v4.1 MAGSAAAAANLEDVPSLDLMSELLRRLKCSDKPDKRLILIGPPGSGKGTQSPIIKDEHCLCHLATGDMLRAAVAAKTPLGIKAKEAMEKGELVSDDLVVG IIDEAMKKPSCQKGFILDGFPRTVVQAQKLDDMLQKQGSKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKAPGVDDVTGEPLIQRKDDTAA VLKSRLEAFHKQTEPVIDYYKKKGAVAELHAEKPPKEVTTEVKKVLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.015G092800 [exp]	0	1
AT1G17030			unknown protein		Potri.004G062000 [exp]	2.23	0.9129
AT1G06890			nodulin MtN21 /EamA-like trans...		Potri.013G154800 [exp]	2.44	0.9060
AT2G04850			Auxin-responsive family protei...		Potri.002G222600 [exp]	5.19	0.8996
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.001G020600 [exp]	9.53	0.8608
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.001G175000 [exp]	10.58	0.8945
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	10.95	0.8327	GLP10.2
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.007G031700 [exp]	13.41	0.8756
AT3G09085			Protein of unknown function (D...		Potri.016G110900 [exp]	14.49	0.8598
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.005G004900 [exp]	15.49	0.8842
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Potri.004G073700 [exp]	15.74	0.8152

Compare expression of checked genes

Potri.015G092800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.