Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14210 679 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 487 / 5e-163 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 447 / 5e-146 Leucine-rich repeat protein kinase family protein (.1.2) AT2G02780 305 / 2e-92 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 303 / 9e-92 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 206 / 4e-55 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 189 / 1e-49 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 182 / 2e-47 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G21480 174 / 3e-45 Malectin/receptor-like protein kinase family protein (.1) AT3G13380 174 / 6e-45 BRL3 BRI1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095600 [exp] 1167 / 0 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G333300 [exp] 771 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 456 / 2e-149 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 417 / 4e-134 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 375 / 1e-118 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 357 / 3e-112 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G139000 [exp] 202 / 6e-54 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 195 / 1e-51 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G161000 [exp] 177 / 7e-46 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032058 [exp] 734 / 0 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 711 / 0 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 705 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 675 / 0 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 458 / 2e-152 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1) Lus10020303 [exp] 415 / 1e-133 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029659 [exp] 403 / 4e-131 AT5G63410 584 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005689 [exp] 397 / 8e-127 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 372 / 4e-117 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 366 / 3e-115 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G093100.13 pacid=42776553 polypeptide=Potri.015G093100.13.p locus=Potri.015G093100 ID=Potri.015G093100.13.v4.1 annot-version=v4.1 ATGGGGCACTGTAGTTTGTTTCTTCTGTCATGTCTTCTGTGGGGTTTTCTCATTACTGGTACTCATCAATTACAATCCTCACAAACACAAGTCCTTCTTC AGATAAGGAAGCATTTAGAGTATCCAAGTCAACTAGAAATTTGGAATAATCATGGAATGGATTTATGCTATTTATCTCCATCCACACAAGTTAATATGAC ATGCCAGAACAATGTTGTTACTGAGCTTAGAATTGTGGGAGACAAGCCAGCCAAGGTCAATAACTTCGTGGGATTTGCAATTCCAAATCAAACTTTATCA GGAAGCTTCTCTATGGATTCTTTTGTGACCACTCTTTCAAGGCTAACCAGCTTGAGAGTTCTTAGTCTTGTGTCTTTAGGCATTTGGGGTCCCCTTCCAG ACAAAATTCATAGGTTGTCTTCACTTGAATATTTGGATTTGAGTTCAAATAATCTCTTTGGTTCCATCCCCCCTAAGATTTCTACAATGGTGAAACTTCA AACTCTTAACCTTGACGACAATTTCTTCAATGGTACAGTCCCGAATTGGTTCGATTCATTGTCTAATCTGACAATTCTAAGCATAAGGAACAACCAGTTG AAAGGTGCATTTCCATCTTCAATCCAGAGAGTAACCACACTTGTTGATCTTATTCTTTCTGGCAATGATTTATCCGGGAAGTTGCCGAATCTTGACAGGT TAAGTAAACTGAATGTGCTAGATTTGAGTGGAAACAGTTTAGATTCTGATCTACCTTCAATGCCTAAAGGGTTGGTCATGGCTTTCCTTAGCAACAACTC CTTGTCTGGTGAGGTTCCAGGGAAATATAGCCAGCTGAGTCAGCTTCAGCATTTCGATATGTCATTCAATAAACTAAGTGGAAAACTCCCTGCTTCCCTT CTCTCATTGCCCAACATCAGCTACTTGAATTTGGCATCAAATATGTTAAGTGGTTCACTTCCAGATCATCTAAACTGTGGCAGCAAACTCCAGCTTGTTG ATATATCTAATAACAGATTAACTGGTGGATTGCCTTATTGTTTGAGTACTGAATCAGGAAATAGAGTGGTAAAGTTAGGTGGAAATTGCTTATCTGTTGA TTTACGTCATCAGCATGCAGAATCATCTTGTATAGATGTTCCTGTAAAAAGGAAACCATCTGGAGAGAAAAAAATAGTGGTATTAGTTGGTGTGATTGCT GGTATATTTGTCATTATAGTTCTCCTGGCTTTCGGTCTTCTCATGGTGTGCAAAAGATATTGCCCTCTAGGGATATCGGAGCAGCATTTGTTGCACAAAG CAGCACAAGAGAAATCAGTGACAGGATTCTCCTCGGAGATCCTCTCTAATGCAAGCTTTATTTCTGAGGCTGCAAATTTGGGTATACAAGGTCGCCCAGC TTGCCGATCATTCACAATAGAAGAGTTAAAGGAAGCAACAAACAACTTTAATAACTCTGCCATTTTGGGCGATGGTTCACATGGAAAGCTTTACAGAGGA ACATTAGAGAATGGAACCCAGGTTGCTATAAGGCGCATACCTTCATCAAAGAAATATTCGATGCGAAATCTTAAACTCAGGCTGGACTTGCTTGCAAAGC TTCGCCACCCGCATCTGGTTTGCCTTTTGGGACACTGCATTGATGGTGGGGAACAAGATTACACAGTGAACAAAGTCTTCCTTGTATACGAATATGTTTC TAACGGCAACTTCGGAGCTTATCTCTCTGAGGACAATCCTGGAAAGGTTCTAAATTGGTCAGAGAGACTGGCAGTGCTAATTAGTGTCGCAAAGGCTATT CATTTTTTGCATACTGGAGTTATTCCTGGTTTTTTTAACAATCGATTGAAGGCAAACAATATCCTGCTTGATGAGTATGGGATAGCAAAGTTGAGTGACT ATGGACTTTCCATCGTCTCTGAAGCAGCTGGAACTTGTGGGGAAAATGGAGAAGGCCCTAAATCATGGCAATTGGAAAGATTAGAGGATGATGTTTGTAG CTTTGGCTTCATATTACTTGAATCACTCGTTGGCCCTTCAGTATCCGCCAGAAGAGACAAGTTTCTACTAGATGAATTGGCATCTTGTAGCAGCCAAGAG GGGCGCCAAAAATTGTTAAGCCCAATTGTTCTGGCCACATGCTCACACGAATCTTTATCAATTGTGGTTACCATAACGAACAAATGCATATGTTCTGAAT CATGGAGTCGTCCATCATTTGAGGACATTCTTTGGAACTTGCAGTATGCAGTTCAGGTCCAGGGAACAGCAGATGGCGAACACCATCGATGA
AA sequence Show only first row Show all	>Potri.015G093100.13 pacid=42776553 polypeptide=Potri.015G093100.13.p locus=Potri.015G093100 ID=Potri.015G093100.13.v4.1 annot-version=v4.1 MGHCSLFLLSCLLWGFLITGTHQLQSSQTQVLLQIRKHLEYPSQLEIWNNHGMDLCYLSPSTQVNMTCQNNVVTELRIVGDKPAKVNNFVGFAIPNQTLS GSFSMDSFVTTLSRLTSLRVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNNLFGSIPPKISTMVKLQTLNLDDNFFNGTVPNWFDSLSNLTILSIRNNQL KGAFPSSIQRVTTLVDLILSGNDLSGKLPNLDRLSKLNVLDLSGNSLDSDLPSMPKGLVMAFLSNNSLSGEVPGKYSQLSQLQHFDMSFNKLSGKLPASL LSLPNISYLNLASNMLSGSLPDHLNCGSKLQLVDISNNRLTGGLPYCLSTESGNRVVKLGGNCLSVDLRHQHAESSCIDVPVKRKPSGEKKIVVLVGVIA GIFVIIVLLAFGLLMVCKRYCPLGISEQHLLHKAAQEKSVTGFSSEILSNASFISEAANLGIQGRPACRSFTIEELKEATNNFNNSAILGDGSHGKLYRG TLENGTQVAIRRIPSSKKYSMRNLKLRLDLLAKLRHPHLVCLLGHCIDGGEQDYTVNKVFLVYEYVSNGNFGAYLSEDNPGKVLNWSERLAVLISVAKAI HFLHTGVIPGFFNNRLKANNILLDEYGIAKLSDYGLSIVSEAAGTCGENGEGPKSWQLERLEDDVCSFGFILLESLVGPSVSARRDKFLLDELASCSSQE GRQKLLSPIVLATCSHESLSIVVTITNKCICSESWSRPSFEDILWNLQYAVQVQGTADGEHHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14210			Leucine-rich repeat protein ki...		Potri.015G093100 [exp]	0	1
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	3.74	0.8332
					Potri.008G148266 [exp]	4.24	0.8375
AT1G51405			myosin-related (.1)		Potri.009G052400 [exp]	4.35	0.8635
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	10.00	0.8028
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	10.24	0.7747
AT3G57030			Calcium-dependent phosphotries...		Potri.008G109966 [exp]	11.74	0.8581
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.002G214000 [exp]	14.00	0.7830
AT4G18830	OFP	ATOFP5, OFP5	ovate family protein 5 (.1)		Potri.015G004300 [exp]	14.28	0.8547
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.005G124000 [exp]	15.23	0.8324
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.004G081433 [exp]	16.52	0.7194

Compare expression of checked genes

Potri.015G093100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.