Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49180 226 / 9e-69 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 72 / 5e-13 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT2G43770 59 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 58 / 4e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 57 / 9e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 57 / 2e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 57 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 54 / 8e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G33340 53 / 3e-07 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G04510 52 / 6e-07 MAC3A MOS4-associated complex 3A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027200 [exp] 233 / 2e-71 AT3G49180 503 / 2e-177 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G384200 [exp] 136 / 2e-35 AT3G49180 125 / 7e-32 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 78 / 5e-15 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.001G173500 [exp] 75 / 5e-14 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.005G148500 [exp] 64 / 7e-11 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 60 / 1e-09 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 57 / 2e-08 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.001G026800 [exp] 52 / 7e-07 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G263400 [exp] 51 / 2e-06 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016759 [exp] 488 / 2e-170 AT3G49180 209 / 2e-62 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10022454 [exp] 484 / 5e-158 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10013988 [exp] 233 / 3e-68 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10015407 [exp] 102 / 5e-24 AT3G49180 169 / 3e-49 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025732 [exp] 100 / 4e-23 AT3G49180 130 / 7e-34 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10034114 [exp] 80 / 2e-15 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10043473 [exp] 78 / 7e-15 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10035930 [exp] 62 / 8e-11 AT3G49180 59 / 6e-10 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 61 / 7e-10 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 61 / 7e-10 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.015G093300.2 pacid=42776242 polypeptide=Potri.015G093300.2.p locus=Potri.015G093300 ID=Potri.015G093300.2.v4.1 annot-version=v4.1 ATGGGAAAGGGAAATGGAAGTGATGAGGTTTTGGTGGTGTGTAGTGATAGGAATATGGGGACAGGGATAGCAATGTGGGATATGGAAACAGGAGATCGTA TTATGCATATACCAACTTGTGCTTCTCCTCTTCATGGCTTGTTGTGTCTGAGAGATCAGTTTCTTGTAGCTTCTCAGGTTAACAAACATGGGTCTGTTGG TGGCGGGGCTATCTTCACTTGGTCATTGAACAAGCCTCAACAACCTCTTCGAAGCTACCCGCTTGAAGCCATCGGCCCACTTGGTTGCACCAAGGACGGC CTGTTTCTTGCAGGTGGTTCTCCGTCTGGAAATGTTTACCTCTGGGAGGTTGCAGGTGGAAGATTACTGAAAACCTGGCGTGCGCATTCCAGGTCCTTGA AATGCTTGATTTTCTCTAATGATGACTCTCTTCTTATTTCTGGTTCAGAAGATGGTGTGGTCTGTGTGTGGTCTATGGTTAGCTTGCTAGATACAGAAGA TTTTGGAAGCTCATGTTCATTGTTGCACTACTCGTCGGAGCATACATCCTCCGTCACCGGTCTGTTGACAACATCAGGCATTGCAAACTCAACTTTTATA TCAAGTTCTCTTGATGCTACATGCAAGGCTTGGGACGTGTTCTCGGGTAGGCTTATACAAACTCAGGATTATCCACTGGGGATAACTGCAATCGTCACTG ATCCAGCAGAGCAGCTCCTGTTCGCTGGAAGCATGGATGGAAGAATATTTGTTAGCGTGCTTGATATTGGACTCCTGGAGGATCCTTTTGCTGTTGCCGG AGATGAACCAGTTGTGCTAAAAGGACACAATGGATCTATAATGGCTTTGACCTTCAGCTCGGTCGGTCTGATATCTGCTTCTGAGGATTGCACTGTCTGT CTCTGGGATGTCGTTGGTCAGGTGATAATACGAAGATTTAACCATAAAAAAGGGGCAGTAACCAATCTTGTAGTGATTCCACGGTCTTTGCTGCATTCTG CATCAAACCATCGAAGAGTTTCCAATCAGTTCCGCATTTCAGTGCTCAGTAAGTGTCCTCAGCCAGCCAACTCATCTAATGGGATTCTCACTCTCCTTCA CACATGTTCTTCCCCCAAGGATCATCAGGCTTCTGTGGATCTCAGAAGAACCAATTCATTGGATCAGCAAATATTTGAGATGGAGCAAGAACAGACACCT GCAGCCATGCAAATGAAGGTAGAAACAAGCATGGACCATCGTACATGGGCTAGAAGGATGACAAATCATGTCATGGAAATGAACAGCCATTTGCAATCTC GTCTGCTCGACTTGATGCAGACTCGATTGTTATTAGCTACTGAAAATGATTCACCCACTACAGGAAAGAGTAAGAAGCTGAAGATCGAAAGTCCACCACT ACAACAACAAGAGAAGATATCACAACCCCCTAGTTAA
AA sequence Show only first row Show all	>Potri.015G093300.2 pacid=42776242 polypeptide=Potri.015G093300.2.p locus=Potri.015G093300 ID=Potri.015G093300.2.v4.1 annot-version=v4.1 MGKGNGSDEVLVVCSDRNMGTGIAMWDMETGDRIMHIPTCASPLHGLLCLRDQFLVASQVNKHGSVGGGAIFTWSLNKPQQPLRSYPLEAIGPLGCTKDG LFLAGGSPSGNVYLWEVAGGRLLKTWRAHSRSLKCLIFSNDDSLLISGSEDGVVCVWSMVSLLDTEDFGSSCSLLHYSSEHTSSVTGLLTTSGIANSTFI SSSLDATCKAWDVFSGRLIQTQDYPLGITAIVTDPAEQLLFAGSMDGRIFVSVLDIGLLEDPFAVAGDEPVVLKGHNGSIMALTFSSVGLISASEDCTVC LWDVVGQVIIRRFNHKKGAVTNLVVIPRSLLHSASNHRRVSNQFRISVLSKCPQPANSSNGILTLLHTCSSPKDHQASVDLRRTNSLDQQIFEMEQEQTP AAMQMKVETSMDHRTWARRMTNHVMEMNSHLQSRLLDLMQTRLLLATENDSPTTGKSKKLKIESPPLQQQEKISQPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.015G093300 [exp]	0	1
AT4G33980			unknown protein		Potri.004G140701 [exp]	12.64	0.6236
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.016G042250 [exp]	15.68	0.6691
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.009G161500 [exp]	33.46	0.6017

Compare expression of checked genes

Potri.015G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.