Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26700 550 / 0 PID2 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G26610 402 / 3e-136 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G47750 403 / 2e-135 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G55910 390 / 2e-131 D6PK D6 protein kinase (.1) AT5G40030 382 / 2e-128 Protein kinase superfamily protein (.1) AT2G34650 374 / 4e-126 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT3G52890 389 / 6e-126 KIPK KCBP-interacting protein kinase (.1.2) AT1G79250 372 / 8e-124 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 371 / 6e-123 AGC1.5 AGC kinase 1.5 (.1.2.3) AT2G44830 376 / 9e-123 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004900 [exp] 405 / 1e-135 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 402 / 1e-134 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 397 / 3e-131 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 394 / 5e-130 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 386 / 1e-129 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 387 / 8e-128 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.006G114900 [exp] 387 / 7e-125 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.009G146700 [exp] 382 / 7e-124 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 376 / 8e-122 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030051 [exp] 615 / 0 AT2G26700 577 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10033029 [exp] 611 / 0 AT2G26700 572 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10042911 [exp] 397 / 7e-134 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10016629 [exp] 399 / 2e-133 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 396 / 1e-132 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 394 / 9e-132 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10036150 [exp] 380 / 1e-128 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10032185 [exp] 381 / 4e-127 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 377 / 5e-126 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 379 / 2e-124 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G093400.1 pacid=42776453 polypeptide=Potri.015G093400.1.p locus=Potri.015G093400 ID=Potri.015G093400.1.v4.1 annot-version=v4.1 ATGACTACCAAAGCGACTAGAGATGAGTCCCTCCCCGACTATGATAGCAGCTCCTCCTCCACCACTGTACCTGACTCTAGCCGGAGCTGGATGAGCAACC TCAGCTTCGGTAGCCGTCGAAGTTCTATCTCTATTTCTTCATCTGTAGCTGATAGTGCTTCAATCTGCAGCACTGCCCGCATGAAGCCACACAAGGCTAA CCAAGCCGCATGGCAGGCCATAAAGCGGCTACAAAGAGCAACAGGCCGAGTTGGTCTCGACCATTTTCGTCTCCTACGCCGTTTAGGCAGTGGAGATATA GGCAATGTCTATCTTTGCCAGATAAGGAACCCTGTGGTGGGTTTGCCACAGTGCTTTTATGCCATGAAAGTGGTGGATAAAGAGGCACTTGCTATAAGGA ACAAGCTGCAGAGAGCTGAGATGGAGAAAGAAATTCTGGGTATGCTTGATCATCCTTTTTTGCCTACTCTTTATGCAGAGTTTGAGGCTTCTCATTACTC TTGCTTGGTTACTGAGTACTGTCCTGGTGGAGATTTGTATGCTGCAAGACAACGCCAGCCATGGAAGCGCTTTAGCATCTCATCTGCTAAGTTTTATGCT GCCGAGACTCTCCTGGCCCTGGAATATCTACACATGATGGGAATTGTTTACAGAGATCTTAAACCGGAGAATGTTCTTGTCAGAGAAGACGGTCACATTA TGCTTTCAGATTTTGATCTTTCTTTCAAATGTGATGTTGTCCCAAAGCTTTTAAGGTCTAAACCCAGCTTGGAAGCCATTGTTCGTCACAAGAATGAAAC CACTAGTTTCGCACCCTTAACCTTTTGCGCTACACCTATACACCCTGTCCTATCTTGTTTCTCATCTTCCAACAAGAAAAGGAAACCTAGAATCACAACT ACAATTACAGAACAAATTGATGGCCAGGGTTATGACGAAGAAGTTGAAACAGAATTGGTAGCCGAGCCCATCAGTGCTAGATCAAAGTCCTTTGTCGGGA CCCACGAGTACTTAGCACCAGAGGTGATATCAGGGCAGGGCCATGGAAGTGCGGTGGATTGGTGGACTCTTGGGGTGTTCTTGTACGAGATGTTATATGG GAGAACACCCTTCAAAGGTGAAAACAACGAAAAAACCTTGATTAACATACTTAAACAGCCCTTAACCTTTCCAAGAATAGGTGTAAATAGCAGCAAAGAA TTTGAAGAGATGGTGAAACTTCAAGACCTTGTAGGCAAGCTTCTAGTGAAGAATCCCAAAAGGAGAATTGGGAGCTTAAAGGGGTCTGTTGAAATCAAGA GGCACGAGTTCTTCAAAGGTGTGAACTGGGCTTTGATCAGGTCAATCAAGCCACCAGAGTCTCCTAGTGATCTTTGCAGGTTCAGGAGTAGAGCTCACAT ACCAATGTTGAGCAAGAAAGAGAGACAAGAACCATATCAGATCCCTAGTCATTTTGAATACTTCTAA
AA sequence Show only first row Show all	>Potri.015G093400.1 pacid=42776453 polypeptide=Potri.015G093400.1.p locus=Potri.015G093400 ID=Potri.015G093400.1.v4.1 annot-version=v4.1 MTTKATRDESLPDYDSSSSSTTVPDSSRSWMSNLSFGSRRSSISISSSVADSASICSTARMKPHKANQAAWQAIKRLQRATGRVGLDHFRLLRRLGSGDI GNVYLCQIRNPVVGLPQCFYAMKVVDKEALAIRNKLQRAEMEKEILGMLDHPFLPTLYAEFEASHYSCLVTEYCPGGDLYAARQRQPWKRFSISSAKFYA AETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRSKPSLEAIVRHKNETTSFAPLTFCATPIHPVLSCFSSSNKKRKPRITT TITEQIDGQGYDEEVETELVAEPISARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGRTPFKGENNEKTLINILKQPLTFPRIGVNSSKE FEEMVKLQDLVGKLLVKNPKRRIGSLKGSVEIKRHEFFKGVNWALIRSIKPPESPSDLCRFRSRAHIPMLSKKERQEPYQIPSHFEYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Potri.015G093400 [exp]	0	1
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	6.00	0.8392
AT2G27770			Plant protein of unknown funct...		Potri.004G187600 [exp]	9.79	0.7916
AT2G28120			Major facilitator superfamily ...		Potri.001G194500 [exp]	13.56	0.7337
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Potri.005G190500 [exp]	15.00	0.7538
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.002G074600 [exp]	16.24	0.7815
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.008G017500 [exp]	20.61	0.7922
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Potri.010G221200 [exp]	21.21	0.7049
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.002G042100 [exp]	25.63	0.7930	Pt-CYP94.3
AT5G67390			unknown protein		Potri.005G145800 [exp]	27.49	0.7924
AT1G78940			Protein kinase protein with ad...		Potri.007G001900 [exp]	30.03	0.7394

Compare expression of checked genes

Potri.015G093400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.