Plant FIBer expression Database

Potri.015G093500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50375 449 / 4e-161 CPI1 cyclopropyl isomerase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038969
[exp]
459 / 9e-165 AT5G50375 471 / 2e-169 cyclopropyl isomerase (.1.2)
Lus10027259
[exp]
327 / 7e-105 AT5G04040 1168 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.015G093500.1 pacid=42775952 polypeptide=Potri.015G093500.1.p locus=Potri.015G093500 ID=Potri.015G093500.1.v4.1 annot-version=v4.1
ATGGGCGGTAAAGAATCATCAGATAGTTCTAGTTCTAGTCCCAGTTTATGGTTGGCTCCAGACCCTAGTAAAAGATGGGGAGAGATTTTCTTTCTTTGTT
ATACTCCTTTTTGGCTCACTCTTTGTTTGGGAATTGTGATTCCTTGCAAGCTGTACGAGAGCTTTACAGAATTGGAATACTTGCTCCTGGGTTTGATCTC
AGCTGTTCCTTCTTTCTTGATACCAATGATGTTTGTCGGTAAGGCTGATAGCAAATTGTGTTGGAAGGACTGTTATTGGGTCAAGGCCAGTCTATGGATA
ATCATTTTTAGCTATGTTGGAAATTACTTCTGGACCCACTATTTTTTCACAGTTTTGGGAGCTTCTTATACATTTCCATCTTGGAAGATGAATAATGTAC
CACATACAACCTTCCTTCTGACACATGTTTGCTTCCTGTTTTATCACGTCACCTCAAACATGACAATTCGCAGACTACGGCATGCGGTTGCTGACTTGCC
AGATTATCTTCGATGGGCTGCTGAGGGTGCATGGATTTTGGCTCTTTCATACTTCATAGCATACCTGGAGACTTTAGCTGTTTCTAATTTCCCTTACTAT
GAGTTTGTGGACCGGGCTTCAATGTACAAAGTAGGTTCCTTGTTTTATGCCATCTACTTCTTTGTAAGCTTCCCAATGTTTCTGAGGATTGATGAGAAAC
CTGGTGATCTATGGGAGTTACCAAGAGTGGCTGTTGATTCCCTGGGTGCTGCAATGTTGGTTACAATAATACTTGACTTGTGGCGAATCTTTTTGGGGCC
TATTGTTCCACTTCCAGTAACAAAACAATGCCTTCAACAGGGACTACCCTGGTTTCCTGGACATGCCACTCAGACATAA
AA sequence
>Potri.015G093500.1 pacid=42775952 polypeptide=Potri.015G093500.1.p locus=Potri.015G093500 ID=Potri.015G093500.1.v4.1 annot-version=v4.1
MGGKESSDSSSSSPSLWLAPDPSKRWGEIFFLCYTPFWLTLCLGIVIPCKLYESFTELEYLLLGLISAVPSFLIPMMFVGKADSKLCWKDCYWVKASLWI
IIFSYVGNYFWTHYFFTVLGASYTFPSWKMNNVPHTTFLLTHVCFLFYHVTSNMTIRRLRHAVADLPDYLRWAAEGAWILALSYFIAYLETLAVSNFPYY
EFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGDLWELPRVAVDSLGAAMLVTIILDLWRIFLGPIVPLPVTKQCLQQGLPWFPGHATQT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50375 CPI1 cyclopropyl isomerase (.1.2) Potri.015G093500
[exp]
0 1
AT4G33865 Ribosomal protein S14p/S29e fa... Potri.001G295902
[exp]
3.60 0.8294
AT3G12587 Oligosaccaryltransferase (.1) Potri.008G053300
[exp]
4.47 0.8052
AT1G67430 Ribosomal protein L22p/L17e fa... Potri.010G060400
[exp]
9.38 0.8282
AT3G18030 ATHAL3A HALOTOLERANCE DETERMINANT 3, A... Potri.015G089600
[exp]
10.09 0.7884
AT3G15380 Plasma-membrane choline transp... Potri.011G121100
[exp]
12.40 0.7851
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Potri.001G197900
[exp]
12.96 0.7659
AT3G05530 ATS6A.2, RPT5A regulatory particle triple-A A... Potri.005G025100
[exp]
14.45 0.7581 Pt-RPT5.1
AT2G47110 UBQ6 ubiquitin 6 (.1.2) Potri.002G190000
[exp]
21.09 0.8027
AT1G65290 MTACP2 mitochondrial acyl carrier pro... Potri.013G084500
[exp]
21.84 0.8052
AT1G03330 Small nuclear ribonucleoprotei... Potri.003G014900
[exp]
21.90 0.7476

Potri.015G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.