Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63420 1230 / 0 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT2G01730 50 / 9e-06 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) AT2G38250 45 / 0.0001 Trihelix Homeodomain-like superfamily protein (.1) AT1G76880 45 / 0.0003 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 44 / 0.0006 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095800 [exp] 1526 / 0 AT5G63420 1300 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.010G106200 [exp] 55 / 2e-07 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.001G454500 [exp] 49 / 2e-05 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.019G010200 [exp] 47 / 4e-05 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.008G179700 [exp] 46 / 0.0001 AT1G13450 541 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.011G147400 [exp] 45 / 0.0002 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.010G055000 [exp] 45 / 0.0002 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.006G101400 [exp] 44 / 0.0004 AT5G01380 179 / 8e-55 Homeodomain-like superfamily protein (.1) Potri.018G049301 [exp] 44 / 0.0005 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016758 [exp] 1231 / 0 AT5G63420 1222 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10022454 [exp] 1221 / 0 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10035763 [exp] 49 / 1e-05 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10020873 [exp] 45 / 0.0002 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 45 / 0.0003 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10037338 [exp] 45 / 0.0003 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10018887 [exp] 44 / 0.0005 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF00753 [poplar] [flax] Lactamase_B Metallo-beta-lactamase superfamily CL0398 [poplar] [flax] RMMBL_DRMBL PF07521 [poplar] [flax] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain
Representative CDS sequence Show only first row Show all	>Potri.015G093600.1 pacid=42776086 polypeptide=Potri.015G093600.1.p locus=Potri.015G093600 ID=Potri.015G093600.1.v4.1 annot-version=v4.1 ATGGCCGCTGCTTTCAGTGCTCTCTCCATCTCTCCGTACACTCTCGTATGCCGCCATAACTCTACCAAACATTCCATTTCCTGCTCTACTGCCTCTCCTA CTACCACTACTATAGGCAGTAGAGGAACGAAAGCGCCGCCGCGGCATAAGAGGAGTGAAAGAATGGAAGGGGCAGGGAAAAGTATGGAAGATTCGGTGAA AAGAAAAATGGAGCAGTTCTATGAAGGGTCTGATGGTCCGCCGTTGCGAATTGTTCCAATTGGTGGCTTGGGTGAGATTGGGATGAATTGTATGCTTGTT GGGAATTTCGATCGATATATTTTAATTGATGCCGGTGTTATGTTTCCTGATTATGATGAGCTTGGAGTGCAAAAGATTATACCTGATACCACATTTATCA GAAGATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCACATTGGCGCGTTGCCTTGGGTTATTCCAGCTTTGGATCATCACAC TCCAATTTATGCATCATCCTTTACAATGGAGCTCATCAAGAAACGTTTAAAGGAGAATGGGATCTTTGTTCCATCAAGACTTAAGGTGTTTAAAACGAAG AGGAAATTTGCAGCTGGGCCTTTTGAAATAGAGCCTATCAGGGTGACCCATTCTATTCCAGATTGTTGTGGACTGGTCCTTCGCTGTGCTGATGGTACAA TTCTTCACACTGGGGACTGGAAGATTGATGAGTCACCATTGGATGGAAAAAAATTTGATCGTGAAACTTTAGAGGAACTCTCAAAAGAAGGAGTTACATT GATGATGAGTGACTCAACAAATATACTGTCACCTGGAAGGACAATTAGTGAAAGTGTGGTAGCTGATGCATTATTGAGACGTATTTCAGCTGCTAAAGGA AGGATTATCACTACTCAATTTGCATCAAATATACACCGTCTTGGAAGTGTGAAAGCAGCTGCTGATTTGACCGGTAGAAAGATGGTCTTCGTTGGCATGT CATTGAGGACATATTTGGATGCGGCGTGGAAGGATGGAAAGGCACCGATTGATCCATCCACTCTGGTTAAAGTGGAAGATATTGATGCTTATGCCCCAAA GGATCTGCTAATTGTCACAACTGGATCACAAGCAGAGCCGCGTGCAGCACTCAATCTTGCGTCATATGGAAGCAGTCATGCCTTAAAACTGAACAAGGAA GATGTTATTCTATATTCAGCTAAGGTAATCCCTGGCAATGAATCTAGGGTAATGAAAATGATGAATCGCATATCAGAGATTGGCTCAACTATAGTAATTG GTAAGAATGAGCTGCTTCACACGTCTGGTCATGGGTATCGTGGAGAACTGGAGGAAGTGCTTAAAATTGTGAAGCCACAACATTTTCTTCCCATACATGG AGAACTTTTGTTTTTGAAAGAACATGAACTGCTTGGGAAATCAACTGGCATTCAGCACACTACCGTTATCAAGAACGGAGAGATGCTTGGGGTTTCTCAC TTGAGGAACAGAAGAGTTCTATCCAATGGTTTTGTCTTCCTTGGGAAGGAAAATTTGCAGTTGATGTACAATGATGGGGATAAGGCATTTGGCACATCAA CTGAGCTTTGTGTTGATGAGAGAATGAGAATTGCAACAGATGGTATTGTAGTGGTCAGCATGGAAATTTTACGCCCTCAAAATGCAGATGGGCTAGTTGA AAATAGCTTAAAAGGAAAAATTAAAATCACAACACGCTGCCTATGGCTGGACAAAGGGAAGCTTTTGGATGCACTCCACAAAGCTGCCCATGCTGCACTT TCAAGCTGTCCAGTGAATTGTCCTTTAGCTCACATGGAAAGAACAGTATCTGAGGTGTTGAGAAAGATGGTAAGGAAGTATAGTGGTAAAAGGCCAGAAG TCATTGCCGTTGCCATGGAGAACCCAGCGGCTGTTCTTTCTGATGAACTCAATGCAAAGTTATCTGGCAATTCACATGTTGGCCTTGGCATATCAGCATT GAGAAAAATGGCTGACGGGCATAAAAAAAAAATTCGGGTGGACAGGAAGCAACCTGATGGAAATGGCTATGCAAATTTAGAGAAAACATCAACACAAAAT TCAGAAGTTGATGGTTTTGAATTTGAAAGAGAGCTATCTAAAGAAGAGGAGACTTCTTCAAGTCCTAGCTTAGCTGAAGGACATTCCTCCGACTCTGAGA ATCAAGATGATTTCAGGAAATCATTCATTCCACCATCCCCAGTCAATGAATTGGTAAAAAGTGATGAAGACTTGGTTCCACCATGGGAGCATGTAAATGA GCTCAAGGAAGATGGTACCATAAGCAGTGATGATGACTCGTTGGAAAATCAAAATTCTAGATCGAAGGGTTCCAGACCTGTAAAACGGAACAAATGGAAA CCTGAGGAGGTTAAGAGTCTTATTAAAATGCGTGGGGAATTACATAGTAGATTTCAAGTTGTAAGAGGTAGAATGGCTCTGTGGGAAGAGATATCTACTA ACTTGATGGCTGATGGGATCAATCATAGTCCAGGACAGTGCAAATATTTATGGACATCTCTTGCTAAAAAATATGAGGAAAGCAAGAGTGACAAGAAAAG CCAAAAAAGTTGGTCCTATTTCGAAGACATGGATAATATTTTATCTGATTCAGAGACAATGGCAACAAAATGA
AA sequence Show only first row Show all	>Potri.015G093600.1 pacid=42776086 polypeptide=Potri.015G093600.1.p locus=Potri.015G093600 ID=Potri.015G093600.1.v4.1 annot-version=v4.1 MAAAFSALSISPYTLVCRHNSTKHSISCSTASPTTTTIGSRGTKAPPRHKRSERMEGAGKSMEDSVKRKMEQFYEGSDGPPLRIVPIGGLGEIGMNCMLV GNFDRYILIDAGVMFPDYDELGVQKIIPDTTFIRRWRHKIEAVIITHGHEDHIGALPWVIPALDHHTPIYASSFTMELIKKRLKENGIFVPSRLKVFKTK RKFAAGPFEIEPIRVTHSIPDCCGLVLRCADGTILHTGDWKIDESPLDGKKFDRETLEELSKEGVTLMMSDSTNILSPGRTISESVVADALLRRISAAKG RIITTQFASNIHRLGSVKAAADLTGRKMVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHALKLNKE DVILYSAKVIPGNESRVMKMMNRISEIGSTIVIGKNELLHTSGHGYRGELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGIQHTTVIKNGEMLGVSH LRNRRVLSNGFVFLGKENLQLMYNDGDKAFGTSTELCVDERMRIATDGIVVVSMEILRPQNADGLVENSLKGKIKITTRCLWLDKGKLLDALHKAAHAAL SSCPVNCPLAHMERTVSEVLRKMVRKYSGKRPEVIAVAMENPAAVLSDELNAKLSGNSHVGLGISALRKMADGHKKKIRVDRKQPDGNGYANLEKTSTQN SEVDGFEFERELSKEEETSSSPSLAEGHSSDSENQDDFRKSFIPPSPVNELVKSDEDLVPPWEHVNELKEDGTISSDDDSLENQNSRSKGSRPVKRNKWK PEEVKSLIKMRGELHSRFQVVRGRMALWEEISTNLMADGINHSPGQCKYLWTSLAKKYEESKSDKKSQKSWSYFEDMDNILSDSETMATK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.015G093600 [exp]	0	1
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.009G041800 [exp]	1.41	0.9528
AT5G37360			unknown protein		Potri.019G023700 [exp]	3.87	0.9478
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	5.65	0.9484
AT1G71710			DNAse I-like superfamily prote...		Potri.002G063500 [exp]	6.92	0.8936	Pt-IP5.2
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	6.92	0.9498
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.008G029300 [exp]	7.74	0.9403
					Potri.003G135200 [exp]	9.53	0.9447
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.001G097300 [exp]	10.19	0.9380
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.002G113600 [exp]	11.61	0.9414
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	14.69	0.9440	RSH1.2

Compare expression of checked genes

Potri.015G093600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.