Plant FIBer expression Database

Potri.015G093700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G095900
[exp]
66 / 5e-15 AT1G24520 / homolog of Brassica campestris pollen protein 1 (.1)
Potri.008G182400
[exp]
43 / 2e-06 AT1G24520 / homolog of Brassica campestris pollen protein 1 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G093700.1 pacid=42776289 polypeptide=Potri.015G093700.1.p locus=Potri.015G093700 ID=Potri.015G093700.1.v4.1 annot-version=v4.1
ATGGCACGCAAACTCATTGTTCTCGCTCTTGTCTTTGTCACCATTGTTGGGTTGGCTGCAGCTGCAGCACCTGCTCCTTCCACAACTGACTTTCCTCCAG
CTGCAGCCCCTGCTCCTTCCACAACTGACTTTACTGCAGCTGAGGCACCTTTAAGCAATGATTTTATCGGTACTGATGACGGTGGTGCGGCTAGTGCACC
TTCTGCTGATGGTACCACAGTTGTTCCAGGACCAATGGGGAGCACTGCAGTAGCTGAGGGTCCTTCTGAAAAAGATGGTGTCGCCACCCTCAAGTTCTCT
GCCGTTGCTGGAGTTGCCGCTGTTGCTGGCTACTTCTTCTTCTTCTAG
AA sequence
>Potri.015G093700.1 pacid=42776289 polypeptide=Potri.015G093700.1.p locus=Potri.015G093700 ID=Potri.015G093700.1.v4.1 annot-version=v4.1
MARKLIVLALVFVTIVGLAAAAAPAPSTTDFPPAAAPAPSTTDFTAAEAPLSNDFIGTDDGGAASAPSADGTTVVPGPMGSTAVAEGPSEKDGVATLKFS
AVAGVAAVAGYFFFF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G24520 BCP1 homolog of Brassica campestris... Potri.015G093700
[exp]
0 1
AT3G48700 ATCXE13 carboxyesterase 13 (.1) Potri.009G104400
[exp]
15.42 0.6916
AT5G13150 ATEXO70C1 exocyst subunit exo70 family p... Potri.001G060700
[exp]
16.49 0.7928
AT2G29100 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, gluta... Potri.004G052400
[exp]
33.46 0.7867
AT1G19190 alpha/beta-Hydrolases superfam... Potri.004G142900
[exp]
34.59 0.7688
AT5G16010 3-oxo-5-alpha-steroid 4-dehydr... Potri.008G013100
[exp]
51.96 0.7648
AT1G73670 ATMPK15 MAP kinase 15 (.1) Potri.010G112200
[exp]
120.24 0.7197
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.003G167800
[exp]
155.03 0.6940

Potri.015G093700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.