Plant FIBer expression Database

Potri.015G094000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24840 1018 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G096100
[exp]
1343 / 0 AT4G24840 1041 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024203
[exp]
1068 / 0 AT4G24840 1060 / 0.0 unknown protein
Lus10009908
[exp]
1064 / 0 AT4G24840 1062 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF06148 COG2 COG (conserved oligomeric Golgi) complex component, COG2
CL0295 PF12022 DUF3510 Domain of unknown function (DUF3510)
Representative CDS sequence
>Potri.015G094000.1 pacid=42776210 polypeptide=Potri.015G094000.1.p locus=Potri.015G094000 ID=Potri.015G094000.1.v4.1 annot-version=v4.1
ATGGCAGTGGATCCGATCCAAACACCACCACCGCCACCTCCAAGATCCAATGCCTATCTCTTCTCGGACCCACTAGATTCCCACCCGTTATGGTTCAAAC
CGGACCTTTTCCTCTCTCCAAATTTTGACTCCGACTCTTACATTTCGGAGCTCCGAACTTTTGTCCCCTTCGACACTCTCCGATCGGAACTCCAAGCACA
CTTAACTTCCCTAAACCACGAATTAATCGATTTAATCAACCGTGATTACGCGGATTTTGTTAATTTAAGTACCAAACTTGTTGATGTGGACTCTGCTGTC
GTTCGGATGCGGGCTCCGTTATTGGAGCTCCGAGAGAAGATTGAAGGGTTTAGAGGGAGTGTGGAGTCGTCTCTTGTGGCTTTGAAGAACGGATTGGAGC
AGAGATCGGAGGCGGCGGCCACTAGAGAGGTTTTGGAGTTGCTGTTGGATACGTTTCATGTTGTTTCTAAGGTTGAGAAATTGATAAAGGAGCTACCTAG
TGTTCCTGCTGATTGGTCGAATGGAGATGTGAATTTGGCGGAAAAGAATGTTGTGAGCAATGGCAGCATTGAGAATGTCACGAATGTGAGAGAGACTCAA
AGCATGCTTTTGGAGAGAATTGCCAGCGAGATGAATCGACTTAAGTTCTACATTGCTCATGCACAGAACCTCCCTTTCATTCAGAACATGGAGAAGAGGA
TTCAAAGTGCGAGCCTATTGTTGGACGCAAGTTTGGGACATTGTTTTGTAGATGGGCTGGAGCACCGGGATGAAAGTGTAATCTATAATTGTTTACGTGC
ATATGCTGCTATTGATAACACTAGCAGCGCAGAAGAAATCTTCCGCACGACTGTTGTGGCTCCATTAGTACAGAAGATCATTCCACATGGACCATCAGGA
GTGGCTGTTGGGGCATCTGGAGATGGACTTGAAAATGATTATCAAGAAATCAAGACATGTATCAACAAGGACTGTAAATTCCTTTTGGAAATATCTTCTG
CAGAAAATTCGGGGTTGCATGTTTTTGACTTCTTGGCTAATTCAATTCTGAAAGAGGTTCTCTCTGCAATTCAAAAGGGAAAACCGGGTGCTTTTTCCCC
TGGAAGACCAACTGAATTCTTGATAAATTACAAATCAAGTCTAGACTTCTTGGCTCATCTTGAAGGCTATTGTCCATCCAGATCTTCTGTTACTAAATTT
CGAGCTGAAGCCATCTACAATGAGTTCATGAAGCAATGGAATGTTGGGGTTTATTTCTCTTTGAGGTTCCAGGAAATAGCTGGTGCTCTGGAATCTGCAC
TTGCAGCAACCAGTCTTATTCCAGTTCACAATTCACATTCTGGCCATTGGAATTCCCAAGATTTAACATTAAAACAAAGTATCACTCTTTTGGAGAGCCT
GAGATCTTGCTGGAGAGAAGATGTTCTCATTTTCTCATGTGCTGACAAGTTTCTTCGCTTAACATTGCAGCTTCTTTCAAGATTCTCAAATTGGTTGTCT
TCTGGTCTGGATGCTCGTAAGACGGGTAATACCAGCTCCAACTCTGGATATGAATGGGCAGCTTCAGCTGTTCCCAGTGATTTTCTCTATATTATTCATG
ATATAAATTGTCTGGTCACAGAGGTTTGTGGAGGTTACCTTGATGATGTACTTCAGCTTCTATCTTCATGTTCCATCGACATACTTGATCTAGTAAAACA
AAGCATTTTACAAGGTGGGAAGTCATTAAATGGTTTGACACCTCTAGTTATCAATGCAATCACAGAGTCACTGGTTGATGAGGCTGTTAAGGGCTTGAAA
GATGTGAAGGCAATTGCTACGACTTTCAGGATGACTAATAAGCCTATTCCTACCAGACATTCACTCTACGTATCAGGATTGTTAACTCCGTTAAAGAAGG
ATTTTCTGGATACTGAGAAACATAGCCCATATTTGACTAAGGAGACTATGAATGAGTTACGGCATGGTGCTGCTACTGCAATTACTGGTCGTTATTATGA
CATGGTTGCTGAAATCGTCAGTGTGGCTAGGAAGACAGAATCTTCACTCCAGAGATTAAAGAAGGGTGCCCAAAGACGAACTGGAGTAAGCTCAGATGTC
TCAGACCCCACTGTATCTGATACTGACAAGCTATGTATGCAATATTTCCTTGATATTCAGGAGTATGGACGCAACCTCTCCACCCTCGGGGTTGATGCAA
AAGAAATTCCAGCTTATCAATCCTTGTGGCAATGTGTCGCTCCTCTAGATAGACAAAATGTGATAAATTTGTGA
AA sequence
>Potri.015G094000.1 pacid=42776210 polypeptide=Potri.015G094000.1.p locus=Potri.015G094000 ID=Potri.015G094000.1.v4.1 annot-version=v4.1
MAVDPIQTPPPPPPRSNAYLFSDPLDSHPLWFKPDLFLSPNFDSDSYISELRTFVPFDTLRSELQAHLTSLNHELIDLINRDYADFVNLSTKLVDVDSAV
VRMRAPLLELREKIEGFRGSVESSLVALKNGLEQRSEAAATREVLELLLDTFHVVSKVEKLIKELPSVPADWSNGDVNLAEKNVVSNGSIENVTNVRETQ
SMLLERIASEMNRLKFYIAHAQNLPFIQNMEKRIQSASLLLDASLGHCFVDGLEHRDESVIYNCLRAYAAIDNTSSAEEIFRTTVVAPLVQKIIPHGPSG
VAVGASGDGLENDYQEIKTCINKDCKFLLEISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTEFLINYKSSLDFLAHLEGYCPSRSSVTKF
RAEAIYNEFMKQWNVGVYFSLRFQEIAGALESALAATSLIPVHNSHSGHWNSQDLTLKQSITLLESLRSCWREDVLIFSCADKFLRLTLQLLSRFSNWLS
SGLDARKTGNTSSNSGYEWAASAVPSDFLYIIHDINCLVTEVCGGYLDDVLQLLSSCSIDILDLVKQSILQGGKSLNGLTPLVINAITESLVDEAVKGLK
DVKAIATTFRMTNKPIPTRHSLYVSGLLTPLKKDFLDTEKHSPYLTKETMNELRHGAATAITGRYYDMVAEIVSVARKTESSLQRLKKGAQRRTGVSSDV
SDPTVSDTDKLCMQYFLDIQEYGRNLSTLGVDAKEIPAYQSLWQCVAPLDRQNVINL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24840 unknown protein Potri.015G094000
[exp]
0 1
AT3G61130 GAUT1, LGT1 galacturonosyltransferase 1 (.... Potri.002G151400
[exp]
1.00 0.9665
AT2G03480 QUL2 QUASIMODO2 LIKE 2 (.1.2) Potri.010G159400
[exp]
1.41 0.9593
AT4G34450 coatomer gamma-2 subunit, puta... Potri.004G153500
[exp]
3.74 0.9452
AT5G61240 Leucine-rich repeat (LRR) fami... Potri.010G160700
[exp]
3.87 0.9448
AT1G75420 UDP-Glycosyltransferase superf... Potri.002G031300
[exp]
6.48 0.9521
AT5G05010 clathrin adaptor complexes med... Potri.012G125500
[exp]
6.92 0.9587
AT3G27325 hydrolases, acting on ester bo... Potri.001G338000
[exp]
7.07 0.9379
AT1G60780 HAP13 HAPLESS 13, Clathrin adaptor c... Potri.010G044700
[exp]
7.48 0.9571
AT2G20840 Secretory carrier membrane pro... Potri.019G104000
[exp]
9.79 0.9336
AT2G40730 CTEXP cytoplasmic tRNA export protei... Potri.013G090500
[exp]
9.79 0.9401

Potri.015G094000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.