Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02480 1129 / 0 AAA-type ATPase family protein (.1) AT1G02890 1100 / 0 AAA-type ATPase family protein (.1.2) AT1G62130 955 / 0 AAA-type ATPase family protein (.1) AT4G24860 946 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19740 498 / 1e-157 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 487 / 2e-155 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G50140 479 / 1e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G28000 455 / 4e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 447 / 4e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27680 285 / 1e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096300 [exp] 2131 / 0 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 1174 / 0 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 1169 / 0 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.007G069800 [exp] 501 / 4e-158 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 500 / 4e-158 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 480 / 1e-152 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 468 / 2e-148 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 423 / 3e-131 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 409 / 6e-126 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010282 [exp] 1066 / 0 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 1057 / 0 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 520 / 1e-165 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 504 / 1e-159 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028752 [exp] 481 / 5e-153 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027551 [exp] 468 / 7e-148 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 467 / 2e-147 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 440 / 2e-137 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 414 / 7e-128 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10013429 [exp] 414 / 4e-125 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.015G094100.4 pacid=42775549 polypeptide=Potri.015G094100.4.p locus=Potri.015G094100 ID=Potri.015G094100.4.v4.1 annot-version=v4.1 ATGGTTTCCACAAGAAGTGGATCTCTTTCTGCTAAGAGATCTTCTTCAGATGACAATAATAACAGTAATAGCAAGAGATCTTCTCCCTCTGAGGATAATA ATAATCATAATCATAATCATAATAATAAGCCACCATCACCCAAACGTCTTAAGGGAGAGAATGGTGGAGTTACGGAGAAACAGATGCCGACGACGGAAAA TTCTAAGGAATCGAGTCCACCGGAGGAGGATCCCGACGACCATGGACCTGGAGATGCTCCGACTAATGGTTGTGGTGGTGGAGGCGCTTTGATTTCGGGG AAAGGTCAAGAGACGGTGACGTCGGCGGTGGCTGTTGTCACACCGATCGCTGAAGGTTCTACTCCGGTTGTACTGGAGAAGCCAAGGAGTTCGTTTTCCA CTTGGAGTTTATATCATAAACAAAATTCAGGTTTCGAAACGCCTTGGTGTAAGCTGCTGTCACAGTCTGCTCAGAATCAGAACATAAAAATCTGCAAGTC GAGCTATTTGATTGGTTCAACCAAACAATGCGATTCTCTGTTGAAGGATCATGCAATGGGCACGATTCAATGCAAGATTAAACACACACAGCGTGAGGGA GGTGCTGTTGCTGTGCTAGAAACCTCAGGGAGCAAGGGTACGGTGCAAGTAAATGGGACAGCTGTCAAAAGGATCTGTGTGCTTAATTCAGGAGATGAGG TTGCCTTTGGTGTGCTGGGGAATCATGCCTTTATTTTTCAGCAACTTTTGACTGAGGTTGCAGTTAAGAGTGCTGAGGTTCATAGTAGTATGGGAAAACT TTTGCAACTCGAAAGGAGGTCAGGAGATCCATCAGCTGTTGCTGGGGCATCAATATTAGCATCCCTTTCAAGCTTGAGGCCAGATTTATCATGCCGGAAG TCTCCAGGACAGACTACCAGTAAAATACACCATGGTAGTGATGTGCCCGCACAGTCTGTCATTCATGATGGTTCGGAGGTCGAGCTTGATGGCATGGAAG GCAATTCAACTCCAAATTTAGGGAGTGATAAAGCTGCTGAAGTTGGAGCAATCGACCATAATCTTTCTCATGATTGCAGCCAGGACTCTGGCACAGAGGC AGGCAATGTAAAAATCTCTGGGATGAATGATTTGATAGGGCCTTTCTTCAGGATGTTAGCTCGAACATCTAGTTATAAACAAAAATTGAGCAAAAATATC TGTAAACAGGTATTGGAAGAAAGGAACGAGTGGACGAAGGATTCACAACTGGCATCGACCTCAGGTATGTCATTGCGATGTGCAGCATTCAAAGACGACT TTCATGCTGGAATTCTTGATGGCCAAAACATAGAAGTTTCATTCGATAATTTCCCTTACTATTTAAGTGAGAATACAAAAAATGTGCTAATTGCAGCTTC ATTTATACACCTGAAGCACAGAAAACATGCAAAATATACCTCAGAACTAACTACAGTCAATCCACGGATTTTGCTTTCTGGTCCCACAGGATCTGAGATA TATCAAGAGATGTTGGCAAAAGCACTTGCCAATTACTTCGGTGCTAAATTGCTCGTATTTGATAGTCATTCATTTTTGGGTGGTTTGTCTTCTAAGGAAG CTAAGCTTATGAAGGATGGATTTAATGCAGAAAAATCCTGCACTTGTTCTAAACAAAGTCCTGTGACCACAGATGCATCGAAGAGTGTGATTTTATCAGC CAGTGAAGCAGACACACCTTGCTCTTTAAATGCACCTACTAATCTAGAATCTCAAACAAAGATGGAAGACACCCTGCCTTCTTCTTCAGGTGTAGGAGCA TCGAGGAATCTCTTGTTTAAAAAAGGTGATAGAGTGAAATTCACAAGCTCATCTTCTAGTGGCTTATATCAAACAGCATCATCATCAAGGGGCCCACCTT ATGGGACTCGTGGAAAAGTTGTGTTACTTTTTGAGGACAATCCTTTGTCAAAAATTGGTGTGAGGTTTGACAAACCAATACATGATGGTGTTGATCTTGG AGATGTTTGTGAGGGAGGTCATGGATATTTCTGCAATGTTGCTGATCTTCGTTTGGAGAACACTGCTGTGGAAGATTTGGACAAGTTACTCATTAACACA TTGTTTGAGGCTGTTCACAGCGAGAGCAGAAATTCTCCTTTCATTTTGTTTATGAAAGATGCAGAGAAATCTATTATAGGGAATTCTGATTCATATTCTA CATTCAAAAGCAGACTTGAAAAACTTCCTGATAATGTTGTAGTAATCGGTTCACACACGCAAAATGACAATCGGAAAGAAAAGCCACATCCTGGTGGTCT TCTTTTCACAAAATTTGGCAGCAATCAGACCGCTCTGCTTGACTTGGCTTTTCCAGATAGTTTTGGAAGACTTGGTGACAGGGGGAAAGAAGTGCCAAAG GCAACAAAACTTCTGACTAAGCTCTTTCCAAACAAAGTAGCTATTCATATGCCACAGGATGAAGCGCTTCTAGCATCTTGGAAGCATCAGTTGGGTCAAG ATTCTGAAACTCTTAAAATGAAGGGGAATCTAAATAACCTGTGCACTGTTTTGGGCCGGTGTGGAATGGAATGTGAAGGACTGGAGACATTATGCATCAA GGATCAAACACTTACAAATGAAAGTGCAGAGAAGGTAGTTGGGTGGGGACTGAGTCATCATCTAATGCAGAATTCTGAAGCTAATGCTGATGCTGATGCG GATGCAAAGCTTGTTTTGTCTAGTGAGAGCATACAGCATGGGATTGGAATCTTGCATGCTATCCAAAATGAATCTAAAAGCTTGAAGAAGTCACTGAAGG ATGTCCTGACTGAAAATGAATTTGAGAAAAGGCTTTTAGGTGATGTCATTCCGCCTAATGACATTGGAGTTACATTTGATGATATCGGAGCTCTTGAGAA TGTCAAGGACACCTTGAAAGAGTTGGTGATGCTTCCTTTACAAAGGCCAGAACTTTTCTGCAAGGGACAATTAACCAAGCCTTGCAAGGGCATACTTTTA TTTGGACCTCCTGGAACTGGAAAGACTATGCTAGCAAAGGCAGTGGCAACTGAAGCTGGGGCCAATTTCATCAACATCTCAATGTCCAGCATCACATCCA AGTGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTATTCTCGCTAGCCAGTAAAATTGCCCCCAGTGTTATCTTTGTTGATGAGGTTGACAGCATGTT GGGAAGGAGGGAAAATCCGGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATTTATGGTGAATTGGGATGGTCTACGAACAAAAGATACAGAACGA GTTCTTGTACTTGCAGCTACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATTAGAAGGTTGCCACGAAGATTGATGGTAAATTTGCCTGACACTCCAA ATAGAGCGAAGATACTCCAAGTCATTTTAGCGAAAGAAGATTTGTCTCCTGATGTTGATTTTGATGCAGTTGCTAGTATGACTGATGGATATTCTGGAAG TGACCTCAAGAACCTATGTGTAGCTGCTGCTCACCGACCAATTAAAGAGATATTGGAAAAGGAAAAGAAGGAACGGGCTGCAGCTCTAGTAGAAGGTAAA CCTGCCCCAGCATTAAGCAGGAGTTCTGATGTCCGGCCCCTAAACATGGTTGACTTCAAAGACGCTCATGAACGGGTATGTGCGAGTGTTTCATCGGAGT CGGTAAACATGACAGAGCTCCTACAATGGAATGAACTGTATGGCGAAGGCGGCTCTAGAAGAAAGAAGGCTCTTAGCTATTTTATGTAA
AA sequence Show only first row Show all	>Potri.015G094100.4 pacid=42775549 polypeptide=Potri.015G094100.4.p locus=Potri.015G094100 ID=Potri.015G094100.4.v4.1 annot-version=v4.1 MVSTRSGSLSAKRSSSDDNNNSNSKRSSPSEDNNNHNHNHNNKPPSPKRLKGENGGVTEKQMPTTENSKESSPPEEDPDDHGPGDAPTNGCGGGGALISG KGQETVTSAVAVVTPIAEGSTPVVLEKPRSSFSTWSLYHKQNSGFETPWCKLLSQSAQNQNIKICKSSYLIGSTKQCDSLLKDHAMGTIQCKIKHTQREG GAVAVLETSGSKGTVQVNGTAVKRICVLNSGDEVAFGVLGNHAFIFQQLLTEVAVKSAEVHSSMGKLLQLERRSGDPSAVAGASILASLSSLRPDLSCRK SPGQTTSKIHHGSDVPAQSVIHDGSEVELDGMEGNSTPNLGSDKAAEVGAIDHNLSHDCSQDSGTEAGNVKISGMNDLIGPFFRMLARTSSYKQKLSKNI CKQVLEERNEWTKDSQLASTSGMSLRCAAFKDDFHAGILDGQNIEVSFDNFPYYLSENTKNVLIAASFIHLKHRKHAKYTSELTTVNPRILLSGPTGSEI YQEMLAKALANYFGAKLLVFDSHSFLGGLSSKEAKLMKDGFNAEKSCTCSKQSPVTTDASKSVILSASEADTPCSLNAPTNLESQTKMEDTLPSSSGVGA SRNLLFKKGDRVKFTSSSSSGLYQTASSSRGPPYGTRGKVVLLFEDNPLSKIGVRFDKPIHDGVDLGDVCEGGHGYFCNVADLRLENTAVEDLDKLLINT LFEAVHSESRNSPFILFMKDAEKSIIGNSDSYSTFKSRLEKLPDNVVVIGSHTQNDNRKEKPHPGGLLFTKFGSNQTALLDLAFPDSFGRLGDRGKEVPK ATKLLTKLFPNKVAIHMPQDEALLASWKHQLGQDSETLKMKGNLNNLCTVLGRCGMECEGLETLCIKDQTLTNESAEKVVGWGLSHHLMQNSEANADADA DAKLVLSSESIQHGIGILHAIQNESKSLKKSLKDVLTENEFEKRLLGDVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILL FGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER VLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTPNRAKILQVILAKEDLSPDVDFDAVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKERAAALVEGK PAPALSRSSDVRPLNMVDFKDAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02480			AAA-type ATPase family protein...		Potri.015G094100 [exp]	0	1
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	1.73	0.8164
AT5G47020			unknown protein		Potri.003G086200 [exp]	5.29	0.7947
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	6.00	0.7740
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	6.24	0.8010
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	12.04	0.7791
AT5G23110			Zinc finger, C3HC4 type (RING ...		Potri.005G093000 [exp]	13.41	0.7409
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.002G047700 [exp]	14.73	0.7168
AT1G50730			unknown protein		Potri.001G356700 [exp]	17.49	0.7590
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Potri.017G101100 [exp]	19.07	0.7449
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	19.89	0.7463

Compare expression of checked genes

Potri.015G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.