Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EEF1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18110 299 / 1e-103 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT1G30230 286 / 2e-98 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1.2) AT5G12110 196 / 6e-63 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) AT5G19510 192 / 2e-61 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096400 [exp] 332 / 2e-116 AT2G18110 275 / 4e-94 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.009G018600 [exp] 201 / 6e-65 AT2G18110 158 / 3e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.001G224700 [exp] 197 / 2e-63 AT2G18110 153 / 3e-46 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037618 [exp] 285 / 7e-98 AT2G18110 319 / 2e-111 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10013555 [exp] 270 / 8e-92 AT2G18110 313 / 3e-109 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10017261 [exp] 266 / 5e-89 AT2G18110 308 / 3e-105 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10026784 [exp] 196 / 5e-63 AT5G12110 297 / 6e-103 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) Lus10036101 [exp] 195 / 9e-63 AT5G12110 296 / 1e-102 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00736 [poplar] [flax] EF1_GNE EF-1 guanine nucleotide exchange domain
Representative CDS sequence Show only first row Show all	>Potri.015G094200.1 pacid=42775187 polypeptide=Potri.015G094200.1.p locus=Potri.015G094200 ID=Potri.015G094200.1.v4.1 annot-version=v4.1 ATGGCAGTCACTTTCTACGATCTCACCTCAGCTGCTGGCCTCAAGAAACTCGATGACTTTCTCCTTTCCCGCAGCTACATTTCCGGGTACCAAGCTTCCA AAGATGATCTGACTGTGTACTCAGCTCTTTCAAGTGCCCCATCAGCTGAACATGTTAACGTGTATCGGTGGTACACTCATATTGATGCTCTCTTGAGGAT CTCTGGTGTCGAAGCTGAAGGATGTGGAGTTGTTGTCAAGGGATCTGCTCCCATCACAGAGGAGGCAATTGCCACTCCTCCATCTGCTGAGACAAAGGCT GCTGAGGATGACGATGACGATGATGTGGATCTCTTTGGTGAGGAGACCGAGGAGGAAAAGAAGGCTGCCGAAGAACGTGCAGCTACTGTTAAGGCAGCCT CGAAGAAGAAAGAGTCTGGCAAGTCATCTGTTTTGTTGGATGTTAAGCCATGGGATGATGAGACTGACATGAAGAAGCTTGAGGAAGCAGTTAGAAGTGT TGAGATGGAAGGACTTCTTTGGGGAGCATCCAAGCTTGTACCTGTAGGATATGGCATTAAGAAATTGACAATTATGCTCACAATTGTTGATGACTTGGTC TCTGTGGACACTCTCATCGAGGAACGTTTGACAACTGAACCCATCAACGAGTATGTCCAGAGCTGTGACATCGTGGCCTTCAACAAAATCTAA
AA sequence Show only first row Show all	>Potri.015G094200.1 pacid=42775187 polypeptide=Potri.015G094200.1.p locus=Potri.015G094200 ID=Potri.015G094200.1.v4.1 annot-version=v4.1 MAVTFYDLTSAAGLKKLDDFLLSRSYISGYQASKDDLTVYSALSSAPSAEHVNVYRWYTHIDALLRISGVEAEGCGVVVKGSAPITEEAIATPPSAETKA AEDDDDDDVDLFGEETEEEKKAAEERAATVKAASKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLTIMLTIVDDLV SVDTLIEERLTTEPINEYVQSCDIVAFNKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18110			Translation elongation factor...		Potri.015G094200 [exp]	0	1	Pt-EEF1.1
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G051300 [exp]	2.82	0.9550
AT1G70600			Ribosomal protein L18e/L15 sup...		Potri.016G069000 [exp]	5.09	0.9493
AT3G60770			Ribosomal protein S13/S15 (.1)		Potri.014G068600 [exp]	7.93	0.9406	RPS13.1
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.012G114000 [exp]	11.18	0.9350
AT4G15000			Ribosomal L27e protein family ...		Potri.001G342500 [exp]	11.48	0.9307	RPL27.3
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Potri.013G159600 [exp]	14.96	0.9148	RPL10.3
AT2G09990			Ribosomal protein S5 domain 2-...		Potri.008G150000 [exp]	15.74	0.9380
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.012G052700 [exp]	15.87	0.9346	Pt-GBF1.3
AT2G41840			Ribosomal protein S5 family pr...		Potri.016G055000 [exp]	18.00	0.9298	Pt-RPS2.3
AT5G02610			Ribosomal L29 family protein ...		Potri.008G048800 [exp]	18.97	0.9349	RPL35.1

Compare expression of checked genes

Potri.015G094200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.