Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63440 429 / 4e-155 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) AT1G49170 67 / 6e-14 Protein of unknown function (DUF167) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096500 [exp] 451 / 2e-163 AT5G63440 442 / 5e-160 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Potri.005G056500 [exp] 58 / 8e-11 AT1G49170 172 / 1e-56 Protein of unknown function (DUF167) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016760 [exp] 437 / 3e-158 AT5G63440 439 / 8e-159 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Lus10022455 [exp] 432 / 3e-156 AT5G63440 439 / 9e-159 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Lus10033521 [exp] 44 / 1e-05 AT1G49170 151 / 3e-48 Protein of unknown function (DUF167) (.1) Lus10028300 [exp] 39 / 0.0007 AT2G40110 228 / 8e-79 Yippee family putative zinc-binding protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02594 [poplar] [flax] DUF167 Uncharacterised ACR, YggU family COG1872
Representative CDS sequence Show only first row Show all	>Potri.015G094300.1 pacid=42774969 polypeptide=Potri.015G094300.1.p locus=Potri.015G094300 ID=Potri.015G094300.1.v4.1 annot-version=v4.1 ATGCCGAAGAGAACAACGCACACGTACTCAAGCGAGAACGCAGTTCCCGAAGGACCAGACTCCGAACTCTTCGTCTACTACTGCAAGCATTGTGGCTCTC ACCTCCTCATCACTGATAACCAATTGCAGAAAATGCCGAAAAGGAAGACTGATAGAGCTTATGTATTAGACAAGAAGAAACATCTTGCAAGGCTCCATAT GAATGAGGCTGGAAAAGTTCTCCTGAAAAGAGGTGAAGGAAAATTTGAGAAGCAATTTCGCATGAACTGCATGGGCTGTGGGCTGTTTGTTTGCTATCGA GCTGAAGAAGATCTGGAATCTGCTTCTTTTATATATGTTGTTGATGGTGCACTTAGCACAGTTGCCGCCGAAACTAACCCTCAGGATGCTCCTGTGCCCC CTTGCATATCACAATTAGGAGGACTTGTGCAGGTGGCCATTGAGGTTGAAGACCGTGCACAAAGATCAGCAATAACAAGAGTGAATGCTGATGATGTTCG AGTCACTGTAGCTGCCCCCGCTGCCCGTGGCGAAGCTAACAACGAACTTTTGGAATTTGTGGGCAAGGTGTTAGGTCTGAAACTGAGCCAGATGACTCTT CAAAGAGGATGGAATAACAAATCAAAGCTGCTTGTTGTGGAGGATCTGTCTGCTAGACAGGTGTACGAGAAACTACTGGAAGCAGCACAACCTTGA
AA sequence Show only first row Show all	>Potri.015G094300.1 pacid=42774969 polypeptide=Potri.015G094300.1.p locus=Potri.015G094300 ID=Potri.015G094300.1.v4.1 annot-version=v4.1 MPKRTTHTYSSENAVPEGPDSELFVYYCKHCGSHLLITDNQLQKMPKRKTDRAYVLDKKKHLARLHMNEAGKVLLKRGEGKFEKQFRMNCMGCGLFVCYR AEEDLESASFIYVVDGALSTVAAETNPQDAPVPPCISQLGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFVGKVLGLKLSQMTL QRGWNNKSKLLVVEDLSARQVYEKLLEAAQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63440			Protein of unknown function (D...		Potri.015G094300 [exp]	0	1
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Potri.010G197800 [exp]	3.87	0.6277	FPGS3,Pt-ATDFB.2
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.004G103800 [exp]	4.24	0.5788
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.015G145600 [exp]	14.24	0.5627
AT2G33390			unknown protein		Potri.008G170700 [exp]	16.24	0.5412
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Potri.001G135700 [exp]	16.97	0.5614
AT3G44990		AtXTH31, XTH31,...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G006600 [exp]	18.65	0.6216	XTR8.1
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.006G100900 [exp]	22.02	0.5728
AT3G25545			unknown protein		Potri.008G110700 [exp]	22.84	0.4797
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.009G165700 [exp]	29.15	0.5560
AT1G11020			RING/FYVE/PHD zinc finger supe...		Potri.018G073400 [exp]	34.59	0.5247

Compare expression of checked genes

Potri.015G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.