Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14170 580 / 0 CHC1 SWIB/MDM2 domain superfamily protein (.1) AT3G01890 514 / 4e-180 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 49 / 9e-07 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 50 / 4e-06 SWIB complex BAF60b domain-containing protein (.1) AT1G49520 47 / 2e-05 SWIB complex BAF60b domain-containing protein (.1) AT1G31760 43 / 4e-05 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 44 / 7e-05 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 43 / 0.0001 SWIB/MDM2 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096700 [exp] 862 / 0 AT5G14170 564 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.017G069300 [exp] 620 / 0 AT5G14170 768 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.001G331400 [exp] 608 / 0 AT5G14170 752 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.005G134500 [exp] 59 / 4e-09 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 48 / 2e-06 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.004G145200 [exp] 48 / 1e-05 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.009G092200 [exp] 44 / 4e-05 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.009G106700 [exp] 46 / 5e-05 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.013G070600 [exp] 40 / 0.0007 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016761 [exp] 624 / 0 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10022456 [exp] 619 / 0 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10032049 [exp] 591 / 0 AT5G14170 756 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10035214 [exp] 477 / 2e-167 AT5G14170 553 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 51 / 1e-07 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 47 / 1e-06 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 49 / 7e-06 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10035215 [exp] 47 / 9e-06 AT5G14170 56 / 1e-14 SWIB/MDM2 domain superfamily protein (.1) Lus10009333 [exp] 48 / 1e-05 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [poplar] [flax] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Potri.015G094500.1 pacid=42774755 polypeptide=Potri.015G094500.1.p locus=Potri.015G094500 ID=Potri.015G094500.1.v4.1 annot-version=v4.1 ATGAATAATAATAGTAATAATCCTGTAAGAAGTATTGGTGTGCCACCCTCGTTTGCGAATCCTGGTGCAATGGCACAATCTACGCACGTGAACCACCAAC CACCGCAGTTGCTCTCACAGTCACAACCTCAAACACAAGGCGGGCCTGCATTTCCTGGCCACTTTCAGCTGTCTGAACCACAAGCTCGGGTGCTAGGATA CACTCAGTTTGCACAGGCAGCTCACACTCAGTTTCAATCTCATATACAATCAACCAACCATTCTGTTGCTCAGTTGCAAAATGCTAATTCTGCTAATGTT GGTGTGCAATCACCTCCTGTGCCCACGCCCAGCAGTTCGAGTGCTAAAAAGACTAGCTATAAACCGCCTTCAAGGCCTTCATCTGGTTCATCGAATGCCA ACATGGCTTCGCTGTTCAAGACCATGGAGTTGGCTCCAGCTGTTCGTAGGAAGAAAAGGAAGCTTCATGAGAAGGAGATACCTGATAAGGTGGTACCTGT TTTGCCAGAGTCTGCACTTTATACCCAGCTGCTTGAATTTGAGGCTAGAGTGGACGCTGCTATGGCAAGAAAGAAGATGGATATTCAAGAGTCACTTAAA AACCCATCCCGTGTTTGGAAAACGCTTCGGGTATATGTATTTAACACTTTTGAAAATCAGGTGCTAGGGTCTAATGAGAGGAAGAGTGCTGAGCCTCCTT CTTGGTCATTAAAAATTATTGGGAGGATATTGGAAGATGGGAAGGACCCTGTGCTGACTGGAATGACCCAGAAACCATATCCAAAATTCTCATCTTACTT CAAGAAGATTACAATATACTTGGACCAGAGCCTCTATCTAGATAACCATGTAATTCTATGGGAGAGCACACGGTCACCTGTTCTTCACGAGGGCTTTGAG GTGAAGAGAAAAGGAAATAAGGAATTTACTGCAAGAATTAGACTAGAAATGAATTACGTGCCTGAGAAATTCAAGCTTTCACCTACTCTATCAGAAATCC TTGGAATCGAGGTAGAGACTCGCCCTAGAATTTTGGTAGCAATATGGCATTATGTGAAGTCTAGGAAGTTGCAGAACCCAAATGATCCCTCCTTCTTCAC ATGTGACCCCCCTCTTCAGAAACTATTCGGGGAAGAGAAGATGAAATTTTCTCAGGTACTACAGAGGATAAGTCTGCATTTAACTCCTCCACAGCCTATT CTTTTGGAACATTCGATCAAGCTCTCAGGGAATTGCCCAGCTGGAACTGCTTGCTATGATTTCATAGTTGATGTTCCTTTGCCATTGCAAAAGGACCTTG CTGCATTCTTGACCAGCACAGAGAGGAACAAAGAAATTGATGCTTGTGATGAATTAATATGTAACTCTATAAAGAAAATACATGAGCATCGCCAGAGGCA GGCTTTCTTTCTTGGTTTCAGCCAGTCTCCAGCAGAGCTTATTAATGCTTTAATTGCTTCTCAGAGCAATGATCTGAAGCTTGTTGCTGGAGATGCTAGC CGCAATGCAGAAAAAGAGCAGCGATCTGGTTTCTATAATCAGCCGTGGGTTGAAGATGCTGTTATTCGTTACCTAAATCGCAAGTCTACTGTAAATGATG CTCCCGGAAGCTCTTGA
AA sequence Show only first row Show all	>Potri.015G094500.1 pacid=42774755 polypeptide=Potri.015G094500.1.p locus=Potri.015G094500 ID=Potri.015G094500.1.v4.1 annot-version=v4.1 MNNNSNNPVRSIGVPPSFANPGAMAQSTHVNHQPPQLLSQSQPQTQGGPAFPGHFQLSEPQARVLGYTQFAQAAHTQFQSHIQSTNHSVAQLQNANSANV GVQSPPVPTPSSSSAKKTSYKPPSRPSSGSSNANMASLFKTMELAPAVRRKKRKLHEKEIPDKVVPVLPESALYTQLLEFEARVDAAMARKKMDIQESLK NPSRVWKTLRVYVFNTFENQVLGSNERKSAEPPSWSLKIIGRILEDGKDPVLTGMTQKPYPKFSSYFKKITIYLDQSLYLDNHVILWESTRSPVLHEGFE VKRKGNKEFTARIRLEMNYVPEKFKLSPTLSEILGIEVETRPRILVAIWHYVKSRKLQNPNDPSFFTCDPPLQKLFGEEKMKFSQVLQRISLHLTPPQPI LLEHSIKLSGNCPAGTACYDFIVDVPLPLQKDLAAFLTSTERNKEIDACDELICNSIKKIHEHRQRQAFFLGFSQSPAELINALIASQSNDLKLVAGDAS RNAEKEQRSGFYNQPWVEDAVIRYLNRKSTVNDAPGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.015G094500 [exp]	0	1
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Potri.009G022200 [exp]	1.00	0.8349
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.004G229100 [exp]	17.49	0.7668
AT3G54130			Josephin family protein (.1)		Potri.006G095700 [exp]	18.76	0.7280
AT1G79220			Mitochondrial transcription te...		Potri.007G069100 [exp]	19.89	0.7814
AT5G57370			unknown protein		Potri.018G091300 [exp]	20.07	0.7125
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	20.19	0.7576
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050500 [exp]	22.47	0.7549
AT1G26650			unknown protein		Potri.008G091500 [exp]	29.39	0.7423
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.006G151800 [exp]	32.17	0.7219	NFC905,ATMSI4.4
AT5G37530			NAD(P)-binding Rossmann-fold s...		Potri.004G083200 [exp]	32.24	0.7415

Compare expression of checked genes

Potri.015G094500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.