Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48530 627 / 0 KING1 SNF1-related protein kinase regulatory subunit gamma 1 (.1) AT1G69800 278 / 3e-89 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) AT1G80090 50 / 1e-06 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1) AT1G15330 48 / 7e-06 AtPV42a Cystathionine beta-synthase (CBS) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G097000 [exp] 796 / 0 AT3G48530 572 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.017G053600 [exp] 249 / 3e-78 AT1G69800 370 / 5e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Potri.009G118700 [exp] 155 / 1e-42 AT3G48530 111 / 9e-27 SNF1-related protein kinase regulatory subunit gamma 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016763 [exp] 679 / 0 AT3G48530 578 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10022458 [exp] 671 / 0 AT3G48530 579 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10030788 [exp] 217 / 4e-66 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10013265 [exp] 190 / 2e-55 AT1G69800 536 / 0.0 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10026352 [exp] 128 / 1e-32 AT3G48530 127 / 4e-32 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10042308 [exp] 124 / 3e-31 AT3G48530 125 / 1e-31 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10029432 [exp] 50 / 2e-06 AT1G15330 398 / 6e-139 Cystathionine beta-synthase (CBS) protein (.1) Lus10004227 [exp] 48 / 8e-06 AT1G15330 418 / 5e-146 Cystathionine beta-synthase (CBS) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.015G094700.1 pacid=42775750 polypeptide=Potri.015G094700.1.p locus=Potri.015G094700 ID=Potri.015G094700.1.v4.1 annot-version=v4.1 ATGCAGCTTATGAGAAAGGAAAATGCTATTGTTCATGAAGTTATGCAAGATAGTCCAAAAAGTCCAGAGGCAAGGCTGGGAATGAAAGTAGAGGATTTAT GGGATGTTCAAGAACCACAGTTAAGTCCAACTGAGAAACTTAACGCTTGCTTTGAGAGTATCCCTGTCTCTGCTTTCCCTCCTGCTCCTTCTTCTCAAGT GATCGAGATAAAATCAGACACCAGTCTAGCAGAGGCTGTTCAAATACTTTCAGAACACAAGATTCTTAGTGCCCCTGTGGTGGATGTTGATGCTCCTGAG GATGCTAGCTGGATTGACAGATACATTGGGATTGTTGAGTTTGCTGGGATTGTAGTCTGGATTTTGCATCAGTCGGAACCTCCATCACCCAGGAGTACAA CCCCGGGATCAGCTCTTGAAGTAGCTGTTAATAGAGTGACCAATGCAGCTGGTTTCGGGATCTTAGGCCCTGAAGATGCTCAAGCAACTTCTGGAAATTT TTTTGAGGCACTGACTTCTTCTGAATTCTACAAGAACACAAAGGTTCGAGACATTGCAGGGTCATTCCGTTGGGCACCATTTCTTGCCTTACAGAAATCA AACTCCTTTTTGACCATGCTTCTGCTGCTTTCAAATTACAAAATGAAGAGCGTTCCAGTGGTTGATCTGGGTGAGGCGAAGATTGACAACATCGTCACTC AGTCTTCTGTTATTCACATGTTAGCAGAATGTGCTGGGCTTCAATGGTTTGAAAGTTGGGGAACCAAGAAACTTTCTGAAATTGGTCTTCCCCTGATGAC CCGTGATCATGTAGTCAAGGTGTACGAGGAAGAACCAGTGCTCCAGGCATTTAAGCTGATGAGGAAAAAGAGAGTTGGAGCAATACCTATTGTTGATAGT AGCGGTATAAAGGTTGTTGGCAACATAAGTATAAGAGATGTCCAGTTCCTTTTAACTGCACCAGAGATCTACCACGATTATAGATCTATCACAGCGAAGA ACTTCTTGACGGCAGTTAGAAGCTACTTGAAGAAGCATCAAGGAACCTCACCTTTTGTGAGTGGCATGGTGGTATGCACAAAAAACCACTCTGTTAAAGA ATTGATTATGAAGCTTGACTCTGAGAAAATCCACCGTGTATATGTTGTGGATGATGCTGGGAATCTGGAAGGGGTGATCACATTGAGAGACATAATCTCA AGGCTTGTACATGAGCCCTATGGCTACTTTGGTGATTTCTTTGATGGAGTGCTGCCATTACCTTTGAACAGTAGAGTATAA
AA sequence Show only first row Show all	>Potri.015G094700.1 pacid=42775750 polypeptide=Potri.015G094700.1.p locus=Potri.015G094700 ID=Potri.015G094700.1.v4.1 annot-version=v4.1 MQLMRKENAIVHEVMQDSPKSPEARLGMKVEDLWDVQEPQLSPTEKLNACFESIPVSAFPPAPSSQVIEIKSDTSLAEAVQILSEHKILSAPVVDVDAPE DASWIDRYIGIVEFAGIVVWILHQSEPPSPRSTTPGSALEVAVNRVTNAAGFGILGPEDAQATSGNFFEALTSSEFYKNTKVRDIAGSFRWAPFLALQKS NSFLTMLLLLSNYKMKSVPVVDLGEAKIDNIVTQSSVIHMLAECAGLQWFESWGTKKLSEIGLPLMTRDHVVKVYEEEPVLQAFKLMRKKRVGAIPIVDS SGIKVVGNISIRDVQFLLTAPEIYHDYRSITAKNFLTAVRSYLKKHQGTSPFVSGMVVCTKNHSVKELIMKLDSEKIHRVYVVDDAGNLEGVITLRDIIS RLVHEPYGYFGDFFDGVLPLPLNSRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.015G094700 [exp]	0	1
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.012G097000 [exp]	1.73	0.8011
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.010G102300 [exp]	2.00	0.7521	Pt-EXGT.3
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Potri.018G058600 [exp]	2.00	0.7958
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	4.58	0.7521
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.002G129300 [exp]	5.47	0.7414	ADR1.1
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G007000 [exp]	6.70	0.7438
AT4G38520			Protein phosphatase 2C family ...		Potri.004G177100 [exp]	7.93	0.7159
AT3G47160			RING/U-box superfamily protein...		Potri.009G045400 [exp]	8.83	0.6736
AT1G27300			unknown protein		Potri.003G170700 [exp]	9.16	0.7389
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Potri.006G222800 [exp]	10.00	0.6805

Compare expression of checked genes

Potri.015G094700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.