Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50380 785 / 0 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 432 / 1e-143 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 412 / 5e-136 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 405 / 3e-133 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT3G29400 366 / 9e-118 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G58430 350 / 3e-112 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G03540 336 / 1e-106 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 330 / 3e-104 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G13150 322 / 4e-101 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G61010 296 / 2e-91 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G097100 [exp] 1062 / 0 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 435 / 1e-144 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G166400 [exp] 434 / 1e-144 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.017G093966 [exp] 423 / 6e-140 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.015G058200 [exp] 396 / 1e-129 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.013G152900 [exp] 372 / 3e-120 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 365 / 8e-118 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.008G017800 [exp] 351 / 5e-112 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 341 / 3e-108 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016764 [exp] 883 / 0 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 803 / 0 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 422 / 3e-139 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 382 / 1e-126 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10035146 [exp] 376 / 2e-121 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10043432 [exp] 327 / 6e-103 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 322 / 6e-101 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10034151 [exp] 303 / 3e-93 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10004917 [exp] 297 / 1e-91 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10012555 [exp] 303 / 2e-90 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.015G094800.2 pacid=42776006 polypeptide=Potri.015G094800.2.p locus=Potri.015G094800 ID=Potri.015G094800.2.v4.1 annot-version=v4.1 ATGACAACCACCACCGCCACAGGCAGTCTAACCAGTGGAGGCGGAGGAGAAGGCGGCGGAGCAGACGATCGCGTCATGGCAACTGCACAGCAGATCGTGA ACAGTTTAAACACGACAAAAAACGTGCGCGAAGACATGTTATTGATCCTTTCTAGTTTCGATAACCGTTTATCGAACATATCGGATTTAATCAAAACTGT TTCCAGTTCTCAATCCTCCGTGTTAGACGCAGCTGAGAAGATCATTCTCCGGTCAGACTCTGGCATCTCCTCCACCGTGTCTTGTGATGAGTCACCGAAG GAGACTAGGGATTATTTATCTGCTGTTGATGAGATTCTTGATTTGTTAGATAACTTATCAGTTGAGCCTGACTTGGAGGTTTTGGACCGGGCGGAGACTG CGGTTCAAGTGGCCATGTCGAGATTGGAAGATGAGTTTAGGCATATTTTGATAAGGAATACAGTTCCGCTTGACGCGCAGAGTTTGTATGGATCTATTAG GAGGGTTTCGCTTTCATTTACGGCAAATGAAGGGGAAATTGATGAGGATTTTGCGAGTTTTGGAGAAGTGGAAACCGAGAGTGTCTGTTTTCATGAGAGA GGAGCGAGCTTAGGAGATGATTTGTGTGTTGATTTGATTAATAGCGAGGCGGTTGTGGAATTGAAAGAGATTGCTGACAGAATGATACGATCCGGGTATG AGAAAGAGTGTGTGCAGGTTTACAGTAGTGTGAGAAGGGAAGCTTTGGATGAGTGTTTGGCTAGTTTGGGTGTTGAGAAGTTGAGTATTGAGGAAGTGCA GAAGATAGAGTGGAAGTCCTTGGATGAGAAGATGAAGAAGTGGGTTCAGGCGGTTAAGATTGGTGTTAGGCTTCTTTTGAGTGGGGAGAGAAGGCTCTGT GATGTGATTTTTAATGGGTCGGATTCGGCTAGGGAGGTTTGTTTTAATGAGATTGCTAAAGGGTGTTTAATGCAGTTGTTGAATTTTGCAGAGGCAGTGT CTATTGTGAGGAGGTCATCGGAGAAGTTGTTTAGGATTTTGGATATGTATGATGCCTTGTCAAATGTTTTCCCCGATTTGGAGGCTATGGCTATGGATAG GTTTGTGTATGGTGAGGCAAAAGGAGTGTTGGATGGATTGGGAGGGGCGGCGAGAGGGACTTTTGTGGAGTTTGAGAATGCTGTGAAAAGTGAGACTTCT AGGAAGCCTATGTTAGGTGGAGAGATTCATCCGCTTACTCGGTATGTGATGAATTATGTGAAATTGCTTGTAGACTATGGTGATACCCTGAATTTTCTTT TGGAGAACGATGATGATGATGAATTAAATGGATTGCAAAATGATGATGGTGAGAGGTTGCAGTTAGAAAGCATGGCTCCTATAACAAGGAGATTGTTGGC TTTGTTATCGACTTTGGAGTCTAATCTTGAGGAGAAATCGAGACTGTATGAGGATGGTGCTATGCAGTATATATTTCTTATGAATAATATTCTGTACATG GTGCAAAAAGTTAAGGATTCAGAACTTATAAAGATTTTGGGAGATCAATGGGTCCGCAAACACCGTGGCCAAATACGCCAGTATGCTACAGCATATCTTA GGGCTGCTTGGAGTAAGGCCTTGTCATGCTTGAAGGATGAAGGGATTGGTGGGAGTTCTAACAATGCCTCTAAAGTGGCTTTGAAGGAAAGGTTCAAGAG TTTTAATGCGTGCTTTGAGGAAATATATAGGATTCAGACTGGTTGGAAGGTTCCGGATCCTCAACTTCGTGAAGAGCTTCGAATATCCATATCTGAAAAG GTATTACCAGCTTATCGCTCATTTATGGGGAGGTTTGGGAGTCAGCTAGAGAGTGGAAGACATGCTGGGAAATACATAAAGTACACACTAGATGATTTAG AGAATTATTTAGTTGATTTGTTTGAAGGGACCCCTCTTGTTCTTCACCACCTAAGAAGAAAGAGTTCATAG
AA sequence Show only first row Show all	>Potri.015G094800.2 pacid=42776006 polypeptide=Potri.015G094800.2.p locus=Potri.015G094800 ID=Potri.015G094800.2.v4.1 annot-version=v4.1 MTTTTATGSLTSGGGGEGGGADDRVMATAQQIVNSLNTTKNVREDMLLILSSFDNRLSNISDLIKTVSSSQSSVLDAAEKIILRSDSGISSTVSCDESPK ETRDYLSAVDEILDLLDNLSVEPDLEVLDRAETAVQVAMSRLEDEFRHILIRNTVPLDAQSLYGSIRRVSLSFTANEGEIDEDFASFGEVETESVCFHER GASLGDDLCVDLINSEAVVELKEIADRMIRSGYEKECVQVYSSVRREALDECLASLGVEKLSIEEVQKIEWKSLDEKMKKWVQAVKIGVRLLLSGERRLC DVIFNGSDSAREVCFNEIAKGCLMQLLNFAEAVSIVRRSSEKLFRILDMYDALSNVFPDLEAMAMDRFVYGEAKGVLDGLGGAARGTFVEFENAVKSETS RKPMLGGEIHPLTRYVMNYVKLLVDYGDTLNFLLENDDDDELNGLQNDDGERLQLESMAPITRRLLALLSTLESNLEEKSRLYEDGAMQYIFLMNNILYM VQKVKDSELIKILGDQWVRKHRGQIRQYATAYLRAAWSKALSCLKDEGIGGSSNNASKVALKERFKSFNACFEEIYRIQTGWKVPDPQLREELRISISEK VLPAYRSFMGRFGSQLESGRHAGKYIKYTLDDLENYLVDLFEGTPLVLHHLRRKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Potri.015G094800 [exp]	0	1
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Potri.018G074100 [exp]	1.00	0.9028
AT3G54780			Zinc finger (C3HC4-type RING f...		Potri.006G000900 [exp]	6.00	0.8464
AT2G22795			unknown protein		Potri.007G008600 [exp]	9.38	0.8946
AT1G76810			eukaryotic translation initiat...		Potri.012G039200 [exp]	15.39	0.8907
					Potri.014G073900 [exp]	16.09	0.8743
AT1G03350			BSD domain-containing protein ...		Potri.010G028801 [exp]	17.14	0.8445
AT5G25280			serine-rich protein-related (....		Potri.006G258600 [exp]	18.57	0.7929
AT5G43490			unknown protein		Potri.001G319500 [exp]	22.18	0.8837
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.005G164100 [exp]	22.80	0.8823
AT3G14067			Subtilase family protein (.1)		Potri.003G067000 [exp]	23.74	0.6982

Compare expression of checked genes

Potri.015G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.