Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13110 268 / 3e-84 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26180 265 / 3e-83 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2) AT5G25120 265 / 5e-83 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26270 262 / 4e-82 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT1G13080 261 / 8e-82 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26170 259 / 5e-81 CYP71B19 "cytochrome P450, family 71, subfamily B, polypeptide 19", cytochrome P450, family 71, subfamily B, polypeptide 19 (.1) AT3G48280 258 / 1e-80 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G24950 258 / 2e-80 CYP71A15 "cytochrome P450, family 71, subfamily A, polypeptide 15", cytochrome P450, family 71, subfamily A, polypeptide 15 (.1) AT3G26210 257 / 4e-80 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT5G25130 256 / 8e-80 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074300 [exp] 477 / 1e-165 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 462 / 4e-160 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 457 / 5e-158 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 446 / 2e-153 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 437 / 3e-150 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 433 / 2e-148 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 390 / 9e-132 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G028000 [exp] 389 / 6e-131 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.001G365100 [exp] 365 / 7e-122 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 385 / 2e-129 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10029035 [exp] 357 / 3e-118 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030708 [exp] 353 / 4e-117 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10019157 [exp] 353 / 6e-117 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10009903 [exp] 352 / 1e-116 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10002885 [exp] 348 / 1e-114 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10042815 [exp] 347 / 2e-114 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10017677 [exp] 342 / 1e-112 AT3G26300 353 / 2e-116 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10017676 [exp] 341 / 2e-112 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10012767 [exp] 340 / 4e-112 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.015G094900.1 pacid=42776400 polypeptide=Potri.015G094900.1.p locus=Potri.015G094900 ID=Potri.015G094900.1.v4.1 annot-version=v4.1 ATGGAGCAACATTTTCCACTTTTCGCAATCTTCTTAACCTTCCTTCTCTTTATCTTCATGGTATTGAGAATGAGGAAAAAATCAGAAACCAACAAGTACT TGACTACAAATCCACCTCCAGGACCATGGAAGTTACCTCTTGTCGGGAACATTCACCACGTAGCTGGCCATCAAATCCATCATCGCTTTACAGACTTGGC CAGGAAGTATGGACCAGTCATGCAAATTCTGCTCGGAGAGGTTCGTTTTGTTGTTATTTCCTCACGAGAAACAGCGAAAGAGGTGATGAAAACCAATGAA AACATCATTGTTGACAGACCTGATGGTGTCATCCCAAGAATCGTGTTTTACAACGGCAAAGCCATCTCTTTTACACCTTATGGAGAATATTGGAAGCAAT TACGAAAAAGCTGCTCATCCAAGCTGCTTAGTCCACAATGTGTAAGGTCACTGATCAGATCAACCATGGAAGAAGAGGTATCGGATTTTGTTACATCAAT TTCTTCGAAAGAAGGATCACCTATCAACCTTAGTAAAATGCTCTTTACATTAACGTTTGGATTAATTTCAAGAGTGATCTTGGGTAAGAAAGGCAAAAAC CAAGCGCTGCTTTCAAGTATAGAAGAATGGAAACAAGGGGGAGCAGGTTTTGATGTTGCAGATATATTTCCTTCTTTTAAATTGTTTCACTCACTTGGCT GGGCAAGGTCAAAATTCGTGAGGCAACATCAAGAGATAGGTGAGATGCTTGAAACCGTTATAAATGAACGCAGAGCCAGCAAAATCAGGACAAAGACCAG TGAGCATGAAATAGAAGAGGATTTTTTAGATGTTCTCGAATTCTTTTTGGCTGGGAGTGACTCGTCATCAGCAGTTATGGAATGGGCAATGTCAGAAATG CTAAAGAATCCAAGACACATGAAAAGGGCACAGAAAGAAGTGAGGGTAGTTTTTACCAAGATGGGAAATGATGATGAAACAAGACTTCATGAACTTAAAT ATTTGCAGCTAATTATCAAAGAAACTACCAGACTCCATCCTCCTGCACCATTGATTCTAAGAGCATGCAGGGAAGCATGCAAGATTAATGGACATGACAT ACCTGACAGAAGTAATAAGTTCAACCCAGAGAGATTCCTAGATTCTTCGATCGATTACATGGGCACTAATTTTGAATTCATCCCATTTGGTGCTGGAAAG AGGAAATGCCCTGGCATGGCATTTGGTTTGGCTATAGTAGAGATGGCGCTTGCGAAGCTATTGTACATTTTTGACTGGAAACTATGTGATGGAGTGAAGA ATGAAGACCTTAACATGAAAGAGGATACTGCACTTGGAAGTACTGTTAAGAGAAAGCATGAGCTTTATCTGATTCCCATCCCATACCATCCTTCGTCGCC TGCGAAATGA
AA sequence Show only first row Show all	>Potri.015G094900.1 pacid=42776400 polypeptide=Potri.015G094900.1.p locus=Potri.015G094900 ID=Potri.015G094900.1.v4.1 annot-version=v4.1 MEQHFPLFAIFLTFLLFIFMVLRMRKKSETNKYLTTNPPPGPWKLPLVGNIHHVAGHQIHHRFTDLARKYGPVMQILLGEVRFVVISSRETAKEVMKTNE NIIVDRPDGVIPRIVFYNGKAISFTPYGEYWKQLRKSCSSKLLSPQCVRSLIRSTMEEEVSDFVTSISSKEGSPINLSKMLFTLTFGLISRVILGKKGKN QALLSSIEEWKQGGAGFDVADIFPSFKLFHSLGWARSKFVRQHQEIGEMLETVINERRASKIRTKTSEHEIEEDFLDVLEFFLAGSDSSSAVMEWAMSEM LKNPRHMKRAQKEVRVVFTKMGNDDETRLHELKYLQLIIKETTRLHPPAPLILRACREACKINGHDIPDRSNKFNPERFLDSSIDYMGTNFEFIPFGAGK RKCPGMAFGLAIVEMALAKLLYIFDWKLCDGVKNEDLNMKEDTALGSTVKRKHELYLIPIPYHPSSPAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Potri.015G094900 [exp]	0	1
					Potri.018G074050 [exp]	3.46	0.7445
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030626 [exp]	9.89	0.7921
AT4G02040			unknown protein		Potri.010G027500 [exp]	20.44	0.6831
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.007G138100 [exp]	27.05	0.7266
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.001G206100 [exp]	33.15	0.7219
AT5G02220			unknown protein		Potri.010G201900 [exp]	33.46	0.7377
					Potri.002G003050 [exp]	38.34	0.7125
					Potri.001G198800 [exp]	39.11	0.7174
					Potri.014G027950 [exp]	47.11	0.6958
					Potri.011G003325 [exp]	54.25	0.6787

Compare expression of checked genes

Potri.015G094900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.